miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33272 3' -46.5 NC_007605.1 + 7879 1.06 0.029927
Target:  5'- aAUAUCUGGAUAGCAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 8025 1.04 0.036918
Target:  5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7699 1.04 0.036918
Target:  5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7789 1.04 0.036918
Target:  5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7849 1.04 0.036918
Target:  5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 8115 1.04 0.036918
Target:  5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7759 1 0.066895
Target:  5'- uAUAUCUGGGUAGUAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7995 1 0.066895
Target:  5'- uAUAUCUGGGUAGUAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 8085 1 0.066895
Target:  5'- uAUAUCUGGGUAGUAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7669 1 0.066895
Target:  5'- uAUAUCUGGGUAGUAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 8174 0.96 0.109786
Target:  5'- aAUAUCUGGAUAGCAUAUGCUAUCUa- -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUAGGau -5'
33272 3' -46.5 NC_007605.1 + 7965 0.95 0.126682
Target:  5'- uGUAUCcGGGUAGCAUAUGCUAUCCUAa -3'
miRNA:   3'- -UAUAGaCCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7819 0.95 0.130338
Target:  5'- uAUAUCUGGGUAGCAUAgGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUaCGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 8145 0.95 0.130338
Target:  5'- uAUAUCUGGGUAGCAUAgGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUaCGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 8055 0.95 0.130338
Target:  5'- uAUAUCUGGGUAGCAUAgGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUaCGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7729 0.95 0.130338
Target:  5'- uAUAUCUGGGUAGCAUAgGCUAUCCUAa -3'
miRNA:   3'- -UAUAGACCUAUCGUAUaCGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7639 0.92 0.209084
Target:  5'- uGUAUCcGGGUAGCAUAUGCUAUCCUc -3'
miRNA:   3'- -UAUAGaCCUAUCGUAUACGAUAGGAu -5'
33272 3' -46.5 NC_007605.1 + 7679 0.84 0.505091
Target:  5'- -gAUUaGGAUAGCAUAUGCUAUCCa- -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUAGGau -5'
33272 3' -46.5 NC_007605.1 + 7933 0.83 0.537351
Target:  5'- -gAUUaGGGUAGUAUAUGCUAUCCUAa -3'
miRNA:   3'- uaUAGaCCUAUCGUAUACGAUAGGAU- -5'
33272 3' -46.5 NC_007605.1 + 7998 0.8 0.69316
Target:  5'- gAUAUUUGGGUAGUAUAUGCUAcCCa- -3'
miRNA:   3'- -UAUAGACCUAUCGUAUACGAUaGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.