Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33272 | 3' | -46.5 | NC_007605.1 | + | 7439 | 0.75 | 0.907721 |
Target: 5'- -cAUgaGGAUAGCAUAUGCUAcCCg- -3' miRNA: 3'- uaUAgaCCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7499 | 0.74 | 0.94282 |
Target: 5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3' miRNA: 3'- uaUAGaCCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7589 | 0.74 | 0.94282 |
Target: 5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3' miRNA: 3'- uaUAGaCCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7639 | 0.92 | 0.209084 |
Target: 5'- uGUAUCcGGGUAGCAUAUGCUAUCCUc -3' miRNA: 3'- -UAUAGaCCUAUCGUAUACGAUAGGAu -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7649 | 0.74 | 0.94282 |
Target: 5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3' miRNA: 3'- uaUAGaCCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7669 | 1 | 0.066895 |
Target: 5'- uAUAUCUGGGUAGUAUAUGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7679 | 0.84 | 0.505091 |
Target: 5'- -gAUUaGGAUAGCAUAUGCUAUCCa- -3' miRNA: 3'- uaUAGaCCUAUCGUAUACGAUAGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7699 | 1.04 | 0.036918 |
Target: 5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7703 | 0.8 | 0.69316 |
Target: 5'- gAUAUUUGGGUAGUAUAUGCUAcCCa- -3' miRNA: 3'- -UAUAGACCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7729 | 0.95 | 0.130338 |
Target: 5'- uAUAUCUGGGUAGCAUAgGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUaCGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7759 | 1 | 0.066895 |
Target: 5'- uAUAUCUGGGUAGUAUAUGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7764 | 0.76 | 0.88634 |
Target: 5'- cUAUUaGGAUAGCAUAUGCUAcCCg- -3' miRNA: 3'- uAUAGaCCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7789 | 1.04 | 0.036918 |
Target: 5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7819 | 0.95 | 0.130338 |
Target: 5'- uAUAUCUGGGUAGCAUAgGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUaCGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7825 | 0.74 | 0.94282 |
Target: 5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3' miRNA: 3'- uaUAGaCCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7849 | 1.04 | 0.036918 |
Target: 5'- uAUAUCUGGGUAGCAUAUGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7879 | 1.06 | 0.029927 |
Target: 5'- aAUAUCUGGAUAGCAUAUGCUAUCCUAa -3' miRNA: 3'- -UAUAGACCUAUCGUAUACGAUAGGAU- -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7905 | 0.75 | 0.900872 |
Target: 5'- uAUAUCUGGGUAGCAUAUaCUAcCCa- -3' miRNA: 3'- -UAUAGACCUAUCGUAUAcGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7915 | 0.74 | 0.94282 |
Target: 5'- -gAUUaGGAUAGCAUAUGCUAcCCa- -3' miRNA: 3'- uaUAGaCCUAUCGUAUACGAUaGGau -5' |
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33272 | 3' | -46.5 | NC_007605.1 | + | 7933 | 0.83 | 0.537351 |
Target: 5'- -gAUUaGGGUAGUAUAUGCUAUCCUAa -3' miRNA: 3'- uaUAGaCCUAUCGUAUACGAUAGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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