miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33272 5' -45 NC_007605.1 + 167070 0.66 0.999996
Target:  5'- uGUGGCuUGGGCUgaAUCCaAAUgUGUAu -3'
miRNA:   3'- cCAUCGuAUCCGA--UAGGaUUAgAUAU- -5'
33272 5' -45 NC_007605.1 + 55690 0.66 0.999993
Target:  5'- cGGUGGCGUggcuucgGGGUUGUCgUGGUUg--- -3'
miRNA:   3'- -CCAUCGUA-------UCCGAUAGgAUUAGauau -5'
33272 5' -45 NC_007605.1 + 125922 0.66 0.999993
Target:  5'- gGGUGGUGgugAGGUUgguggcggcccucGUCCUGAUCUc-- -3'
miRNA:   3'- -CCAUCGUa--UCCGA-------------UAGGAUUAGAuau -5'
33272 5' -45 NC_007605.1 + 156780 0.67 0.999986
Target:  5'- gGGUAGCGUGGGUcaguccaucaccaaCCUAGUCa--- -3'
miRNA:   3'- -CCAUCGUAUCCGaua-----------GGAUUAGauau -5'
33272 5' -45 NC_007605.1 + 87722 0.69 0.999809
Target:  5'- cGGUGGCGUAGGCUugaCUGGa----- -3'
miRNA:   3'- -CCAUCGUAUCCGAuagGAUUagauau -5'
33272 5' -45 NC_007605.1 + 156658 0.7 0.999018
Target:  5'- uGGUGGCGgGGGUggugAUCCUGGUUa--- -3'
miRNA:   3'- -CCAUCGUaUCCGa---UAGGAUUAGauau -5'
33272 5' -45 NC_007605.1 + 8168 0.72 0.995633
Target:  5'- uGGaUAGCAUAuGCUAUC-UAAUCUAUAu -3'
miRNA:   3'- -CC-AUCGUAUcCGAUAGgAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7632 0.72 0.994863
Target:  5'- gGGUAGCAUAuGCUAUCCUcaugcauauacAGUCa--- -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGA-----------UUAGauau -5'
33272 5' -45 NC_007605.1 + 157820 0.73 0.990617
Target:  5'- --gGGCAgUAGGCUGUCCUGuUCUcgAg -3'
miRNA:   3'- ccaUCGU-AUCCGAUAGGAUuAGAuaU- -5'
33272 5' -45 NC_007605.1 + 7958 0.79 0.872305
Target:  5'- gGGUAGCAUAuGCUAUCCUAAUa---- -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAgauau -5'
33272 5' -45 NC_007605.1 + 8078 0.86 0.552269
Target:  5'- gGGUAGUAUAuGCUAUCCUAAUUUAUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7752 0.86 0.552269
Target:  5'- gGGUAGUAUAuGCUAUCCUAAUUUAUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7928 0.86 0.552269
Target:  5'- gGGUAGUAUAuGCUAUCCUAAUUUAUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7873 0.88 0.46762
Target:  5'- uGGaUAGCAUAuGCUAUCCUAAUCUAUAu -3'
miRNA:   3'- -CC-AUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7988 0.92 0.305895
Target:  5'- gGGUAGUAUAuGCUAUCCUAAUCUGUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7662 0.92 0.305895
Target:  5'- gGGUAGUAUAuGCUAUCCUAAUCUGUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 8108 0.96 0.180481
Target:  5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7842 0.96 0.180481
Target:  5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 7692 0.96 0.180481
Target:  5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5'
33272 5' -45 NC_007605.1 + 8018 0.96 0.180481
Target:  5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3'
miRNA:   3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.