miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33273 5' -45 NC_007605.1 + 169281 0.66 0.999998
Target:  5'- uGAGGCAag-GCUGUgGggUaaccgUAGGGg -3'
miRNA:   3'- cCUUCGUauaCGAUAgCuuA-----AUCCCa -5'
33273 5' -45 NC_007605.1 + 119498 0.66 0.999996
Target:  5'- uGGggGCcaagGUGCU-UCGGGguaaggggcgugauuUUGGGGUg -3'
miRNA:   3'- -CCuuCGua--UACGAuAGCUU---------------AAUCCCA- -5'
33273 5' -45 NC_007605.1 + 7443 0.67 0.999981
Target:  5'- aGGAuAGCAUAUGCUAccCGGAUacagauUAGGa- -3'
miRNA:   3'- -CCU-UCGUAUACGAUa-GCUUA------AUCCca -5'
33273 5' -45 NC_007605.1 + 7769 0.67 0.999981
Target:  5'- aGGAuAGCAUAUGCUAccCGGAUacagauUAGGa- -3'
miRNA:   3'- -CCU-UCGUAUACGAUa-GCUUA------AUCCca -5'
33273 5' -45 NC_007605.1 + 108053 0.67 0.999981
Target:  5'- uGGggGUggGUGCaa--GAAUUGGGGc -3'
miRNA:   3'- -CCuuCGuaUACGauagCUUAAUCCCa -5'
33273 5' -45 NC_007605.1 + 69241 0.68 0.999973
Target:  5'- aGGggGCAgaaacccacGUGCUgGUCGAGUagacucugAGGGa -3'
miRNA:   3'- -CCuuCGUa--------UACGA-UAGCUUAa-------UCCCa -5'
33273 5' -45 NC_007605.1 + 7693 0.68 0.999962
Target:  5'- uGGGuAGCAUAUGCUAUCcuaaucuauaucuGGGUa -3'
miRNA:   3'- -CCU-UCGUAUACGAUAGcuuaau-------CCCA- -5'
33273 5' -45 NC_007605.1 + 8109 0.68 0.999962
Target:  5'- uGGGuAGCAUAUGCUAUCcuaaucuauaucuGGGUa -3'
miRNA:   3'- -CCU-UCGUAUACGAUAGcuuaau-------CCCA- -5'
33273 5' -45 NC_007605.1 + 7783 0.68 0.999962
Target:  5'- uGGGuAGCAUAUGCUAUCcuaaucuauaucuGGGUa -3'
miRNA:   3'- -CCU-UCGUAUACGAUAGcuuaau-------CCCA- -5'
33273 5' -45 NC_007605.1 + 8019 0.68 0.999962
Target:  5'- uGGGuAGCAUAUGCUAUCcuaaucuauaucuGGGUa -3'
miRNA:   3'- -CCU-UCGUAUACGAUAGcuuaau-------CCCA- -5'
33273 5' -45 NC_007605.1 + 50094 0.68 0.999951
Target:  5'- gGGAuAGCGUGcGCUAcCGGAUggcGGGUa -3'
miRNA:   3'- -CCU-UCGUAUaCGAUaGCUUAau-CCCA- -5'
33273 5' -45 NC_007605.1 + 57589 0.68 0.999951
Target:  5'- uGGggGCugcUGCUgcaGUCGGGgaAGGGg -3'
miRNA:   3'- -CCuuCGuauACGA---UAGCUUaaUCCCa -5'
33273 5' -45 NC_007605.1 + 156369 0.68 0.999912
Target:  5'- aGAGGCAUGuUGCUgagcgagcucGUCGAucccGGGGUa -3'
miRNA:   3'- cCUUCGUAU-ACGA----------UAGCUuaa-UCCCA- -5'
33273 5' -45 NC_007605.1 + 77176 0.68 0.999912
Target:  5'- cGGGAGCGg--GCacGUCGGguggcGUUGGGGUc -3'
miRNA:   3'- -CCUUCGUauaCGa-UAGCU-----UAAUCCCA- -5'
33273 5' -45 NC_007605.1 + 140527 0.68 0.999912
Target:  5'- gGGggGUAUGUGCUG-CGuu---GGGa -3'
miRNA:   3'- -CCuuCGUAUACGAUaGCuuaauCCCa -5'
33273 5' -45 NC_007605.1 + 7873 0.69 0.999844
Target:  5'- uGGAuAGCAUAUGCUAUCcuaaucuauaucuGGGUa -3'
miRNA:   3'- -CCU-UCGUAUACGAUAGcuuaau-------CCCA- -5'
33273 5' -45 NC_007605.1 + 42105 0.69 0.999747
Target:  5'- aGAGGC-UAUGCUAUCaGGUUaaaAGGGa -3'
miRNA:   3'- cCUUCGuAUACGAUAGcUUAA---UCCCa -5'
33273 5' -45 NC_007605.1 + 126437 0.7 0.99959
Target:  5'- gGGAAGCuUGgaaGCUggaAUCGAGcgGGGGUg -3'
miRNA:   3'- -CCUUCGuAUa--CGA---UAGCUUaaUCCCA- -5'
33273 5' -45 NC_007605.1 + 43787 0.71 0.999009
Target:  5'- uGGAuuGGCugucAUGCUAUUGggUUAacGGGUg -3'
miRNA:   3'- -CCU--UCGua--UACGAUAGCuuAAU--CCCA- -5'
33273 5' -45 NC_007605.1 + 8168 0.72 0.997833
Target:  5'- uGGAuAGCAUAUGCUAUCuAAUcuauaucuGGGUa -3'
miRNA:   3'- -CCU-UCGUAUACGAUAGcUUAau------CCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.