Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 33273 | 5' | -45 | NC_007605.1 | + | 43787 | 0.71 | 0.999009 |
|
Target: 5'- uGGAuuGGCugucAUGCUAUUGggUUAacGGGUg -3' miRNA: 3'- -CCU--UCGua--UACGAUAGCuuAAU--CCCA- -5' |
|||||||
| 33273 | 5' | -45 | NC_007605.1 | + | 8168 | 0.72 | 0.997833 |
|
Target: 5'- uGGAuAGCAUAUGCUAUCuAAUcuauaucuGGGUa -3' miRNA: 3'- -CCU-UCGUAUACGAUAGcUUAau------CCCA- -5' |
|||||||
| 33273 | 5' | -45 | NC_007605.1 | + | 7959 | 0.82 | 0.776189 |
|
Target: 5'- cGGGuAGCAUAUGCUAUCcuaauagaGAUUAGGGUa -3' miRNA: 3'- -CCU-UCGUAUACGAUAGc-------UUAAUCCCA- -5' |
|||||||
| 33273 | 5' | -45 | NC_007605.1 | + | 9211 | 1.11 | 0.029805 |
|
Target: 5'- gGGAAGCAUAUGCUAUCGAAUUAGGGUu -3' miRNA: 3'- -CCUUCGUAUACGAUAGCUUAAUCCCA- -5' |
|||||||
| 33273 | 5' | -45 | NC_007605.1 | + | 119498 | 0.66 | 0.999996 |
|
Target: 5'- uGGggGCcaagGUGCU-UCGGGguaaggggcgugauuUUGGGGUg -3' miRNA: 3'- -CCuuCGua--UACGAuAGCUU---------------AAUCCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home