miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 3' -53.3 NC_007605.1 + 29286 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 26217 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 19202 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 22271 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 25340 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 28409 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 34547 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 31478 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 13065 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 16134 0.68 0.890144
Target:  5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCUggGaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 36047 0.68 0.903642
Target:  5'- uUGGGgGGAaaUCCUCAGGGuGGGCAg-- -3'
miRNA:   3'- uAUUCgCCU--GGGAGUUCU-CCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 71880 0.68 0.910016
Target:  5'- ----cUGGACCCUauGGAGGGCAg-- -3'
miRNA:   3'- uauucGCCUGGGAguUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 88339 0.68 0.912495
Target:  5'- uAUGGGCuGGGCCUUaccagcauccaucacCGAGAGGGCGc-- -3'
miRNA:   3'- -UAUUCG-CCUGGGA---------------GUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 163218 0.67 0.922002
Target:  5'- ---uGgGGACCCUgCAGGAGGGgAc-- -3'
miRNA:   3'- uauuCgCCUGGGA-GUUCUCCCgUaau -5'
33274 3' -53.3 NC_007605.1 + 169081 0.67 0.927611
Target:  5'- -aAAGCGGGuCCC-CGGG-GGGCAa-- -3'
miRNA:   3'- uaUUCGCCU-GGGaGUUCuCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 60939 0.67 0.942899
Target:  5'- --cGGCGGGCCCgggUCAgcucgggggaagGGAGGGCc--- -3'
miRNA:   3'- uauUCGCCUGGG---AGU------------UCUCCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 58229 0.67 0.942899
Target:  5'- aAUGAGuCGGAUgUgaaagaUCGAGAGGGCAg-- -3'
miRNA:   3'- -UAUUC-GCCUGgG------AGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 153149 0.67 0.942899
Target:  5'- -gAAGgGGGCCCUUAgcaugGGAGGcGCGg-- -3'
miRNA:   3'- uaUUCgCCUGGGAGU-----UCUCC-CGUaau -5'
33274 3' -53.3 NC_007605.1 + 24634 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 21565 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.