miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 3' -53.3 NC_007605.1 + 9351 1.05 0.007511
Target:  5'- gAUAAGCGGACCCUCAAGAGGGCAUUAg -3'
miRNA:   3'- -UAUUCGCCUGGGAGUUCUCCCGUAAU- -5'
33274 3' -53.3 NC_007605.1 + 40677 0.84 0.192426
Target:  5'- gGUAGGCGGAgCCUCAGGAGGGUc--- -3'
miRNA:   3'- -UAUUCGCCUgGGAGUUCUCCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 143493 0.84 0.192426
Target:  5'- gGUAGGCGGAgCCUCAGGAGGGUc--- -3'
miRNA:   3'- -UAUUCGCCUgGGAGUUCUCCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 59051 0.74 0.584321
Target:  5'- -cAAGCGGcAUCCUCAAG-GGGCAc-- -3'
miRNA:   3'- uaUUCGCC-UGGGAGUUCuCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 75934 0.73 0.637224
Target:  5'- cAUGAGCccauGACCCUCGGGuGGGCGg-- -3'
miRNA:   3'- -UAUUCGc---CUGGGAGUUCuCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 109293 0.73 0.658415
Target:  5'- gAUGGGCGGuuGCCCUCG-GAGGGUg--- -3'
miRNA:   3'- -UAUUCGCC--UGGGAGUuCUCCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 127367 0.72 0.710827
Target:  5'- --cGGCGGAUgugCCUCAGGAGGGuCAg-- -3'
miRNA:   3'- uauUCGCCUG---GGAGUUCUCCC-GUaau -5'
33274 3' -53.3 NC_007605.1 + 160213 0.72 0.731359
Target:  5'- -cGGGCGG-CCCagAGGAGGGCGc-- -3'
miRNA:   3'- uaUUCGCCuGGGagUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 62637 0.71 0.751523
Target:  5'- gGUAAGCGuGGCCgCUCAuGAGGGUg--- -3'
miRNA:   3'- -UAUUCGC-CUGG-GAGUuCUCCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 168786 0.71 0.771234
Target:  5'- -aGGGgGGGUCCUCGAGGGGGCcgUc -3'
miRNA:   3'- uaUUCgCCUGGGAGUUCUCCCGuaAu -5'
33274 3' -53.3 NC_007605.1 + 86539 0.71 0.771234
Target:  5'- ---cGUGGACCCUUGguugcGGAGGGCGg-- -3'
miRNA:   3'- uauuCGCCUGGGAGU-----UCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 116390 0.69 0.843974
Target:  5'- --cAGCGaGGCCCUCuuugaucagGAGGGGGCGc-- -3'
miRNA:   3'- uauUCGC-CUGGGAG---------UUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 93519 0.69 0.875672
Target:  5'- ---uGCGuGGCCgUCAuGGAGGGCAUg- -3'
miRNA:   3'- uauuCGC-CUGGgAGU-UCUCCCGUAau -5'
33274 3' -53.3 NC_007605.1 + 153887 0.69 0.875672
Target:  5'- -gAAGCuGGCCCUCGGGguugaGGGGCGc-- -3'
miRNA:   3'- uaUUCGcCUGGGAGUUC-----UCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 32355 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 29286 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 26217 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 20080 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 23148 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 35424 0.69 0.883028
Target:  5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3'
miRNA:   3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.