miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 3' -53.3 NC_007605.1 + 45092 0.66 0.96337
Target:  5'- -cGGGUGGGCCC-CGAGGcucucgcagaguGGGCAg-- -3'
miRNA:   3'- uaUUCGCCUGGGaGUUCU------------CCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 18496 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 21565 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 24634 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 27703 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 30772 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 33841 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 66386 0.66 0.955913
Target:  5'- cAUGAGCaaGGGCCCagGGGAGGGa---- -3'
miRNA:   3'- -UAUUCG--CCUGGGagUUCUCCCguaau -5'
33274 3' -53.3 NC_007605.1 + 117377 0.66 0.95976
Target:  5'- -aGGGCGGACCCUaaCAGGGucaucguccuGGGCc--- -3'
miRNA:   3'- uaUUCGCCUGGGA--GUUCU----------CCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 15427 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 12358 0.66 0.951823
Target:  5'- ----cCGGuCCCUCcGGGGGGCAg-- -3'
miRNA:   3'- uauucGCCuGGGAGuUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 58229 0.67 0.942899
Target:  5'- aAUGAGuCGGAUgUgaaagaUCGAGAGGGCAg-- -3'
miRNA:   3'- -UAUUC-GCCUGgG------AGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 143493 0.84 0.192426
Target:  5'- gGUAGGCGGAgCCUCAGGAGGGUc--- -3'
miRNA:   3'- -UAUUCGCCUgGGAGUUCUCCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 75934 0.73 0.637224
Target:  5'- cAUGAGCccauGACCCUCGGGuGGGCGg-- -3'
miRNA:   3'- -UAUUCGc---CUGGGAGUUCuCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 62637 0.71 0.751523
Target:  5'- gGUAAGCGuGGCCgCUCAuGAGGGUg--- -3'
miRNA:   3'- -UAUUCGC-CUGG-GAGUuCUCCCGuaau -5'
33274 3' -53.3 NC_007605.1 + 86539 0.71 0.771234
Target:  5'- ---cGUGGACCCUUGguugcGGAGGGCGg-- -3'
miRNA:   3'- uauuCGCCUGGGAGU-----UCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 168786 0.71 0.771234
Target:  5'- -aGGGgGGGUCCUCGAGGGGGCcgUc -3'
miRNA:   3'- uaUUCgCCUGGGAGUUCUCCCGuaAu -5'
33274 3' -53.3 NC_007605.1 + 153887 0.69 0.875672
Target:  5'- -gAAGCuGGCCCUCGGGguugaGGGGCGc-- -3'
miRNA:   3'- uaUUCGcCUGGGAGUUC-----UCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 169081 0.67 0.927611
Target:  5'- -aAAGCGGGuCCC-CGGG-GGGCAa-- -3'
miRNA:   3'- uaUUCGCCU-GGGaGUUCuCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 60939 0.67 0.942899
Target:  5'- --cGGCGGGCCCgggUCAgcucgggggaagGGAGGGCc--- -3'
miRNA:   3'- uauUCGCCUGGG---AGU------------UCUCCCGuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.