Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33274 | 3' | -53.3 | NC_007605.1 | + | 9351 | 1.05 | 0.007511 |
Target: 5'- gAUAAGCGGACCCUCAAGAGGGCAUUAg -3' miRNA: 3'- -UAUUCGCCUGGGAGUUCUCCCGUAAU- -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 12358 | 0.66 | 0.951823 |
Target: 5'- ----cCGGuCCCUCcGGGGGGCAg-- -3' miRNA: 3'- uauucGCCuGGGAGuUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 13065 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 13822 | 0.66 | 0.966747 |
Target: 5'- -gGGGUGGACa--CAGGGGGGCGg-- -3' miRNA: 3'- uaUUCGCCUGggaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 13942 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 14797 | 0.66 | 0.966747 |
Target: 5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3' miRNA: 3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 14867 | 0.66 | 0.95976 |
Target: 5'- -cGAGgGGACCCUgagaCGGGuGGGUGUg- -3' miRNA: 3'- uaUUCgCCUGGGA----GUUCuCCCGUAau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 15427 | 0.66 | 0.951823 |
Target: 5'- ----cCGGuCCCUCcGGGGGGCAg-- -3' miRNA: 3'- uauucGCCuGGGAGuUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 16134 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 16891 | 0.66 | 0.966747 |
Target: 5'- -gGGGUGGACa--CAGGGGGGCGg-- -3' miRNA: 3'- uaUUCGCCUGggaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 17011 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 17866 | 0.66 | 0.966747 |
Target: 5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3' miRNA: 3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 17936 | 0.66 | 0.95976 |
Target: 5'- -cGAGgGGACCCUgagaCGGGuGGGUGUg- -3' miRNA: 3'- uaUUCgCCUGGGA----GUUCuCCCGUAau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 18496 | 0.66 | 0.951823 |
Target: 5'- ----cCGGuCCCUCcGGGGGGCAg-- -3' miRNA: 3'- uauucGCCuGGGAGuUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 19202 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 19960 | 0.66 | 0.966747 |
Target: 5'- -gGGGUGGACa--CAGGGGGGCGg-- -3' miRNA: 3'- uaUUCGCCUGggaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 20080 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 20935 | 0.66 | 0.966747 |
Target: 5'- gGUAAGCGGuucACCUUCA--GGGGUAg-- -3' miRNA: 3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 21005 | 0.66 | 0.95976 |
Target: 5'- -cGAGgGGACCCUgagaCGGGuGGGUGUg- -3' miRNA: 3'- uaUUCgCCUGGGA----GUUCuCCCGUAau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 21565 | 0.66 | 0.951823 |
Target: 5'- ----cCGGuCCCUCcGGGGGGCAg-- -3' miRNA: 3'- uauucGCCuGGGAGuUCUCCCGUaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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