Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33274 | 3' | -53.3 | NC_007605.1 | + | 9351 | 1.05 | 0.007511 |
Target: 5'- gAUAAGCGGACCCUCAAGAGGGCAUUAg -3' miRNA: 3'- -UAUUCGCCUGGGAGUUCUCCCGUAAU- -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 28409 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 22271 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 13822 | 0.66 | 0.966747 |
Target: 5'- -gGGGUGGACa--CAGGGGGGCGg-- -3' miRNA: 3'- uaUUCGCCUGggaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 160213 | 0.72 | 0.731359 |
Target: 5'- -cGGGCGG-CCCagAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCuGGGagUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 116390 | 0.69 | 0.843974 |
Target: 5'- --cAGCGaGGCCCUCuuugaucagGAGGGGGCGc-- -3' miRNA: 3'- uauUCGC-CUGGGAG---------UUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 35424 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 32355 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 23148 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 31478 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 17011 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 26217 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 59051 | 0.74 | 0.584321 |
Target: 5'- -cAAGCGGcAUCCUCAAG-GGGCAc-- -3' miRNA: 3'- uaUUCGCC-UGGGAGUUCuCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 13942 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 109293 | 0.73 | 0.658415 |
Target: 5'- gAUGGGCGGuuGCCCUCG-GAGGGUg--- -3' miRNA: 3'- -UAUUCGCC--UGGGAGUuCUCCCGuaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 29286 | 0.69 | 0.883028 |
Target: 5'- -cGGGCuGGGCCgC-CAGGGGGGCAa-- -3' miRNA: 3'- uaUUCG-CCUGG-GaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 34547 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 25340 | 0.68 | 0.890144 |
Target: 5'- -gGAGCGGAgaC-CAGGAGGGCGc-- -3' miRNA: 3'- uaUUCGCCUggGaGUUCUCCCGUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 127367 | 0.72 | 0.710827 |
Target: 5'- --cGGCGGAUgugCCUCAGGAGGGuCAg-- -3' miRNA: 3'- uauUCGCCUG---GGAGUUCUCCC-GUaau -5' |
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33274 | 3' | -53.3 | NC_007605.1 | + | 93519 | 0.69 | 0.875672 |
Target: 5'- ---uGCGuGGCCgUCAuGGAGGGCAUg- -3' miRNA: 3'- uauuCGC-CUGGgAGU-UCUCCCGUAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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