Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33274 | 5' | -49.2 | NC_007605.1 | + | 9314 | 1.05 | 0.02004 |
Target: 5'- uUAUAAGGCCCCCUUGUUAACCCUAAAc -3' miRNA: 3'- -AUAUUCCGGGGGAACAAUUGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 162129 | 0.73 | 0.886953 |
Target: 5'- cGUGAGGaCCCCCUUGUcgaUGGCCa---- -3' miRNA: 3'- aUAUUCC-GGGGGAACA---AUUGGgauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 120488 | 0.72 | 0.894168 |
Target: 5'- --cAGGGCCCCUUggcUUGGCCCUGc- -3' miRNA: 3'- auaUUCCGGGGGAac-AAUUGGGAUuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 152647 | 0.71 | 0.946968 |
Target: 5'- ----uGGCCCCCggguccaccgUGggGACCCUGGu -3' miRNA: 3'- auauuCCGGGGGa---------ACaaUUGGGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 113572 | 0.71 | 0.946968 |
Target: 5'- ----uGGUCUCCUUGUUGACCuCUAc- -3' miRNA: 3'- auauuCCGGGGGAACAAUUGG-GAUuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 11477 | 0.7 | 0.951477 |
Target: 5'- --aAGGGCCUCCUgagGUUuucucaggaGGCCCUAAu -3' miRNA: 3'- auaUUCCGGGGGAa--CAA---------UUGGGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 105253 | 0.7 | 0.951477 |
Target: 5'- --aGAGGCCCCCgaGU--GCCCg--- -3' miRNA: 3'- auaUUCCGGGGGaaCAauUGGGauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 104914 | 0.7 | 0.953206 |
Target: 5'- --cAAGGCCCCgccaucccacgaccaCcUGUUGACCCUGGu -3' miRNA: 3'- auaUUCCGGGG---------------GaACAAUUGGGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 78458 | 0.69 | 0.97595 |
Target: 5'- aGUAAGGCCCCCgacaUGACCa---- -3' miRNA: 3'- aUAUUCCGGGGGaacaAUUGGgauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 154152 | 0.69 | 0.978515 |
Target: 5'- --cAAGGCCUUCgUGgaGGCCCUGAGc -3' miRNA: 3'- auaUUCCGGGGGaACaaUUGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 4569 | 0.69 | 0.980872 |
Target: 5'- ---cAGGCCCCCgucgcugaUGUcauGCCCUGAc -3' miRNA: 3'- auauUCCGGGGGa-------ACAau-UGGGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 105264 | 0.68 | 0.98303 |
Target: 5'- ----cGGCCCCCgggGUUuGCCCa--- -3' miRNA: 3'- auauuCCGGGGGaa-CAAuUGGGauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 66098 | 0.68 | 0.98303 |
Target: 5'- --cAGGGCCCCCuUUGUgGACCa---- -3' miRNA: 3'- auaUUCCGGGGG-AACAaUUGGgauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 12018 | 0.68 | 0.984998 |
Target: 5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3' miRNA: 3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 33501 | 0.68 | 0.984998 |
Target: 5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3' miRNA: 3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 30432 | 0.68 | 0.984998 |
Target: 5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3' miRNA: 3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 72985 | 0.68 | 0.984998 |
Target: 5'- --gGGGGCCCCCUUGau--CUUUAGAu -3' miRNA: 3'- auaUUCCGGGGGAACaauuGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 24294 | 0.68 | 0.984998 |
Target: 5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3' miRNA: 3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 15087 | 0.68 | 0.984998 |
Target: 5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3' miRNA: 3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 27363 | 0.68 | 0.984998 |
Target: 5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3' miRNA: 3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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