miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 5' -49.2 NC_007605.1 + 19289 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 33501 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 56142 0.67 0.993408
Target:  5'- --cGAGGCCaCCUUGU---CCCUGAu -3'
miRNA:   3'- auaUUCCGGgGGAACAauuGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 152966 0.67 0.994337
Target:  5'- --aAGGGCCCCCUUccuuuCCCUu-- -3'
miRNA:   3'- auaUUCCGGGGGAAcaauuGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 111964 0.67 0.995158
Target:  5'- aAUAGGGCCCCUUUu---GCCCc--- -3'
miRNA:   3'- aUAUUCCGGGGGAAcaauUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 161145 0.66 0.995879
Target:  5'- aUAUAAuGGCCUCCagGccAGCCCUGAu -3'
miRNA:   3'- -AUAUU-CCGGGGGaaCaaUUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 163923 0.66 0.997534
Target:  5'- gGUcGGGCCUCCU-GUgcagAGCCUUGAc -3'
miRNA:   3'- aUAuUCCGGGGGAaCAa---UUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 13151 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 16220 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 30432 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 27363 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 24294 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 11477 0.7 0.951477
Target:  5'- --aAGGGCCUCCUgagGUUuucucaggaGGCCCUAAu -3'
miRNA:   3'- auaUUCCGGGGGAa--CAA---------UUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 105253 0.7 0.951477
Target:  5'- --aGAGGCCCCCgaGU--GCCCg--- -3'
miRNA:   3'- auaUUCCGGGGGaaCAauUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 66098 0.68 0.98303
Target:  5'- --cAGGGCCCCCuUUGUgGACCa---- -3'
miRNA:   3'- auaUUCCGGGGG-AACAaUUGGgauuu -5'
33274 5' -49.2 NC_007605.1 + 72985 0.68 0.984998
Target:  5'- --gGGGGCCCCCUUGau--CUUUAGAu -3'
miRNA:   3'- auaUUCCGGGGGAACaauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 12018 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 15087 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 18156 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 21225 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.