miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 5' -49.2 NC_007605.1 + 9314 1.05 0.02004
Target:  5'- uUAUAAGGCCCCCUUGUUAACCCUAAAc -3'
miRNA:   3'- -AUAUUCCGGGGGAACAAUUGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 168979 0.66 0.997534
Target:  5'- ----cGGCCCCCUcGagGACCCc--- -3'
miRNA:   3'- auauuCCGGGGGAaCaaUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 91498 0.66 0.997534
Target:  5'- ----cGGCCCCCgcagUAACCCc--- -3'
miRNA:   3'- auauuCCGGGGGaacaAUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 71310 0.66 0.997944
Target:  5'- -----aGCCCCCUggccucucUGACCCUAGAg -3'
miRNA:   3'- auauucCGGGGGAaca-----AUUGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 104914 0.7 0.953206
Target:  5'- --cAAGGCCCCgccaucccacgaccaCcUGUUGACCCUGGu -3'
miRNA:   3'- auaUUCCGGGG---------------GaACAAUUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 78458 0.69 0.97595
Target:  5'- aGUAAGGCCCCCgacaUGACCa---- -3'
miRNA:   3'- aUAUUCCGGGGGaacaAUUGGgauuu -5'
33274 5' -49.2 NC_007605.1 + 4569 0.69 0.980872
Target:  5'- ---cAGGCCCCCgucgcugaUGUcauGCCCUGAc -3'
miRNA:   3'- auauUCCGGGGGa-------ACAau-UGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 105264 0.68 0.98303
Target:  5'- ----cGGCCCCCgggGUUuGCCCa--- -3'
miRNA:   3'- auauuCCGGGGGaa-CAAuUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 66101 0.67 0.991185
Target:  5'- --aAGGGCCUCCUccuUGUuggUGACCUUGGu -3'
miRNA:   3'- auaUUCCGGGGGA---ACA---AUUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 105540 0.67 0.995158
Target:  5'- --gGGGcGCCCCCgUGggAACgCCUGAu -3'
miRNA:   3'- auaUUC-CGGGGGaACaaUUG-GGAUUu -5'
33274 5' -49.2 NC_007605.1 + 137127 0.68 0.989871
Target:  5'- cGUAAGGCCCCgagugggUGUagcaggGGCCCUGc- -3'
miRNA:   3'- aUAUUCCGGGGga-----ACAa-----UUGGGAUuu -5'
33274 5' -49.2 NC_007605.1 + 120488 0.72 0.894168
Target:  5'- --cAGGGCCCCUUggcUUGGCCCUGc- -3'
miRNA:   3'- auaUUCCGGGGGAac-AAUUGGGAUuu -5'
33274 5' -49.2 NC_007605.1 + 6623 0.66 0.99645
Target:  5'- ----uGGCCCCCUcuuuuacccucucUGggAACCCg--- -3'
miRNA:   3'- auauuCCGGGGGA-------------ACaaUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 113572 0.71 0.946968
Target:  5'- ----uGGUCUCCUUGUUGACCuCUAc- -3'
miRNA:   3'- auauuCCGGGGGAACAAUUGG-GAUuu -5'
33274 5' -49.2 NC_007605.1 + 71524 0.68 0.988409
Target:  5'- --aAGGGCCCCCagg--GugCCUAGAg -3'
miRNA:   3'- auaUUCCGGGGGaacaaUugGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 51351 0.66 0.99651
Target:  5'- ---cAGGCCCCCgauugaUGgcaaGGCCCUAu- -3'
miRNA:   3'- auauUCCGGGGGa-----ACaa--UUGGGAUuu -5'
33274 5' -49.2 NC_007605.1 + 2492 0.66 0.997944
Target:  5'- --aAGGGCCCUCU-GgaAGCCCg--- -3'
miRNA:   3'- auaUUCCGGGGGAaCaaUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 152647 0.71 0.946968
Target:  5'- ----uGGCCCCCggguccaccgUGggGACCCUGGu -3'
miRNA:   3'- auauuCCGGGGGa---------ACaaUUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 154152 0.69 0.978515
Target:  5'- --cAAGGCCUUCgUGgaGGCCCUGAGc -3'
miRNA:   3'- auaUUCCGGGGGaACaaUUGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 88077 0.67 0.994337
Target:  5'- aUGUGAGGCCCCgCggcaGgaGGCCCa--- -3'
miRNA:   3'- -AUAUUCCGGGG-Gaa--CaaUUGGGauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.