miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 5' -49.2 NC_007605.1 + 88077 0.67 0.994337
Target:  5'- aUGUGAGGCCCCgCggcaGgaGGCCCa--- -3'
miRNA:   3'- -AUAUUCCGGGG-Gaa--CaaUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 56142 0.67 0.993408
Target:  5'- --cGAGGCCaCCUUGU---CCCUGAu -3'
miRNA:   3'- auaUUCCGGgGGAACAauuGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 66101 0.67 0.991185
Target:  5'- --aAGGGCCUCCUccuUGUuggUGACCUUGGu -3'
miRNA:   3'- auaUUCCGGGGGA---ACA---AUUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 137127 0.68 0.989871
Target:  5'- cGUAAGGCCCCgagugggUGUagcaggGGCCCUGc- -3'
miRNA:   3'- aUAUUCCGGGGga-----ACAa-----UUGGGAUuu -5'
33274 5' -49.2 NC_007605.1 + 71524 0.68 0.988409
Target:  5'- --aAGGGCCCCCagg--GugCCUAGAg -3'
miRNA:   3'- auaUUCCGGGGGaacaaUugGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 72985 0.68 0.984998
Target:  5'- --gGGGGCCCCCUUGau--CUUUAGAu -3'
miRNA:   3'- auaUUCCGGGGGAACaauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 15087 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 18156 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 21225 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 24294 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 27363 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 30432 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 33501 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 12018 0.68 0.984998
Target:  5'- -cUAAGGCCCUCggGUcc-CCCUGGAc -3'
miRNA:   3'- auAUUCCGGGGGaaCAauuGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 105264 0.68 0.98303
Target:  5'- ----cGGCCCCCgggGUUuGCCCa--- -3'
miRNA:   3'- auauuCCGGGGGaa-CAAuUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 66098 0.68 0.98303
Target:  5'- --cAGGGCCCCCuUUGUgGACCa---- -3'
miRNA:   3'- auaUUCCGGGGG-AACAaUUGGgauuu -5'
33274 5' -49.2 NC_007605.1 + 4569 0.69 0.980872
Target:  5'- ---cAGGCCCCCgucgcugaUGUcauGCCCUGAc -3'
miRNA:   3'- auauUCCGGGGGa-------ACAau-UGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 154152 0.69 0.978515
Target:  5'- --cAAGGCCUUCgUGgaGGCCCUGAGc -3'
miRNA:   3'- auaUUCCGGGGGaACaaUUGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 78458 0.69 0.97595
Target:  5'- aGUAAGGCCCCCgacaUGACCa---- -3'
miRNA:   3'- aUAUUCCGGGGGaacaAUUGGgauuu -5'
33274 5' -49.2 NC_007605.1 + 104914 0.7 0.953206
Target:  5'- --cAAGGCCCCgccaucccacgaccaCcUGUUGACCCUGGu -3'
miRNA:   3'- auaUUCCGGGG---------------GaACAAUUGGGAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.