Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 33274 | 5' | -49.2 | NC_007605.1 | + | 105253 | 0.7 | 0.951477 |
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Target: 5'- --aGAGGCCCCCgaGU--GCCCg--- -3' miRNA: 3'- auaUUCCGGGGGaaCAauUGGGauuu -5' |
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| 33274 | 5' | -49.2 | NC_007605.1 | + | 11477 | 0.7 | 0.951477 |
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Target: 5'- --aAGGGCCUCCUgagGUUuucucaggaGGCCCUAAu -3' miRNA: 3'- auaUUCCGGGGGAa--CAA---------UUGGGAUUu -5' |
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| 33274 | 5' | -49.2 | NC_007605.1 | + | 152647 | 0.71 | 0.946968 |
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Target: 5'- ----uGGCCCCCggguccaccgUGggGACCCUGGu -3' miRNA: 3'- auauuCCGGGGGa---------ACaaUUGGGAUUu -5' |
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| 33274 | 5' | -49.2 | NC_007605.1 | + | 113572 | 0.71 | 0.946968 |
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Target: 5'- ----uGGUCUCCUUGUUGACCuCUAc- -3' miRNA: 3'- auauuCCGGGGGAACAAUUGG-GAUuu -5' |
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| 33274 | 5' | -49.2 | NC_007605.1 | + | 120488 | 0.72 | 0.894168 |
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Target: 5'- --cAGGGCCCCUUggcUUGGCCCUGc- -3' miRNA: 3'- auaUUCCGGGGGAac-AAUUGGGAUuu -5' |
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| 33274 | 5' | -49.2 | NC_007605.1 | + | 162129 | 0.73 | 0.886953 |
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Target: 5'- cGUGAGGaCCCCCUUGUcgaUGGCCa---- -3' miRNA: 3'- aUAUUCC-GGGGGAACA---AUUGGgauuu -5' |
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| 33274 | 5' | -49.2 | NC_007605.1 | + | 9314 | 1.05 | 0.02004 |
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Target: 5'- uUAUAAGGCCCCCUUGUUAACCCUAAAc -3' miRNA: 3'- -AUAUUCCGGGGGAACAAUUGGGAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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