miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 27389 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 61028 0.66 0.98106
Target:  5'- -gGGCAGCUCguUGGAGaGGACCcGGCGa -3'
miRNA:   3'- gaCCGUCGGG--AUUUCgUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 50743 0.66 0.98106
Target:  5'- -aGGCAcccGCCCUGGGGUccGGCUUGGCc -3'
miRNA:   3'- gaCCGU---CGGGAUUUCGu-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 84359 0.66 0.983132
Target:  5'- -aGGCAGCCagaacAGAGCAGccaagagccacGCCUGAa- -3'
miRNA:   3'- gaCCGUCGGga---UUUCGUC-----------UGGAUUgu -5'
33275 3' -52.4 NC_007605.1 + 35237 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 54523 0.67 0.967765
Target:  5'- -cGGUAGCCgCggggguGGCGGGCCaAGCGu -3'
miRNA:   3'- gaCCGUCGG-Gauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 71975 0.67 0.95275
Target:  5'- aCUGGCcucAGCCCUauuuaugauucugGAGGCGGGCacgCUGAUg -3'
miRNA:   3'- -GACCG---UCGGGA-------------UUUCGUCUG---GAUUGu -5'
33275 3' -52.4 NC_007605.1 + 5209 0.67 0.95717
Target:  5'- gUGGCacGGCCUgccAGGGCAGAgucCCUGGCc -3'
miRNA:   3'- gACCG--UCGGGa--UUUCGUCU---GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 22961 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 154142 0.67 0.964465
Target:  5'- gUGGaGGCCCUGAGccccgccaaccuGCAGGCCcUGGCc -3'
miRNA:   3'- gACCgUCGGGAUUU------------CGUCUGG-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 164982 0.67 0.960935
Target:  5'- cCUGa-AGCCCguGAGCuGGCCUGACGa -3'
miRNA:   3'- -GACcgUCGGGauUUCGuCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 54028 0.67 0.964465
Target:  5'- -aGGCcGCCCUGgcccGGGCAGcgGCCgggAACGg -3'
miRNA:   3'- gaCCGuCGGGAU----UUCGUC--UGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 166802 0.67 0.953164
Target:  5'- -gGGCAGgCCgcAGGCAGAggacugcugcUCUAGCAa -3'
miRNA:   3'- gaCCGUCgGGauUUCGUCU----------GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 96824 0.67 0.95717
Target:  5'- -aGGUGGCCCaGAuGguGAgCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGaUUuCguCU-GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 106477 0.67 0.95717
Target:  5'- -cGGCGGCU----GGCAGGCCU-GCAc -3'
miRNA:   3'- gaCCGUCGGgauuUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 126751 0.67 0.964465
Target:  5'- -gGGCAGacaUUGGAGCAGcACCUGAUc -3'
miRNA:   3'- gaCCGUCgg-GAUUUCGUC-UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.