miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 21251 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 21524 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 22961 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 23154 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 23320 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 24320 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 24593 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 26030 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 26223 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 26389 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 27389 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 27662 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 29099 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 29292 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 29458 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 30458 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 30731 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 32168 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 32361 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 32527 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.