miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 2704 0.68 0.943484
Target:  5'- -cGGCGGCCCggcgccaaCAGGCCUuuCAg -3'
miRNA:   3'- gaCCGUCGGGauuuc---GUCUGGAuuGU- -5'
33275 3' -52.4 NC_007605.1 + 5209 0.67 0.95717
Target:  5'- gUGGCacGGCCUgccAGGGCAGAgucCCUGGCc -3'
miRNA:   3'- gACCG--UCGGGa--UUUCGUCU---GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 9528 0.7 0.862976
Target:  5'- gUGGCuuucaUCCUGGAGCAGACUUuGCAg -3'
miRNA:   3'- gACCGuc---GGGAUUUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 10575 0.66 0.982933
Target:  5'- -gGGCccaGGCCUUGcaGGGCAGACgguuaggCUGACAa -3'
miRNA:   3'- gaCCG---UCGGGAU--UUCGUCUG-------GAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 10610 0.66 0.978804
Target:  5'- gCUGGCccgGGCuCCUAAGaUGGACCUAgaACAa -3'
miRNA:   3'- -GACCG---UCG-GGAUUUcGUCUGGAU--UGU- -5'
33275 3' -52.4 NC_007605.1 + 11260 0.66 0.978804
Target:  5'- uUGGCGGcCCCUAAGGgGGGgaCUAAg- -3'
miRNA:   3'- gACCGUC-GGGAUUUCgUCUg-GAUUgu -5'
33275 3' -52.4 NC_007605.1 + 12317 0.73 0.714621
Target:  5'- -aGGCGGCCCUAcuGgGGACCgggggaggAACAg -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGa-------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 13948 0.69 0.912084
Target:  5'- -aGGCAGCCCcAAAGCGGguGCaguACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGgauUGU- -5'
33275 3' -52.4 NC_007605.1 + 14114 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 15114 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 15386 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 17016 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 17182 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 18182 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 18455 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 20085 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 20251 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.