miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 168140 0.71 0.829904
Target:  5'- -aGGC-GCaCCUGGAGguGGuCCUGACAa -3'
miRNA:   3'- gaCCGuCG-GGAUUUCguCU-GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 166802 0.67 0.953164
Target:  5'- -gGGCAGgCCgcAGGCAGAggacugcugcUCUAGCAa -3'
miRNA:   3'- gaCCGUCgGGauUUCGUCU----------GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 164982 0.67 0.960935
Target:  5'- cCUGa-AGCCCguGAGCuGGCCUGACGa -3'
miRNA:   3'- -GACcgUCGGGauUUCGuCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 161408 0.71 0.84933
Target:  5'- aCUGGCAGCgugacaaCCggacgggccuuGCAGACCUGGCu -3'
miRNA:   3'- -GACCGUCG-------GGauuu-------CGUCUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 154142 0.67 0.964465
Target:  5'- gUGGaGGCCCUGAGccccgccaaccuGCAGGCCcUGGCc -3'
miRNA:   3'- gACCgUCGGGAUUU------------CGUCUGG-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 150889 0.66 0.983132
Target:  5'- cCUGGuCAGCCgCagagGAAGCAuGACCUugggguggGACGg -3'
miRNA:   3'- -GACC-GUCGG-Ga---UUUCGU-CUGGA--------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 150624 0.66 0.979038
Target:  5'- -gGGCGGCCCgggcuccagcagaacGucGCAGACCcAGCc -3'
miRNA:   3'- gaCCGUCGGGa--------------UuuCGUCUGGaUUGu -5'
33275 3' -52.4 NC_007605.1 + 144496 0.72 0.764979
Target:  5'- aCUGGCAGCC---GAGCAGAuUCUAAUg -3'
miRNA:   3'- -GACCGUCGGgauUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 135020 0.76 0.587322
Target:  5'- uCUGGCAcgccgugGCCCUGAgcauGGCGG-CCUGGCAc -3'
miRNA:   3'- -GACCGU-------CGGGAUU----UCGUCuGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 133864 0.74 0.68342
Target:  5'- -gGGCAGCCUggaggucuGGCAGguGCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGauu-----UCGUC--UGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 133685 0.66 0.98106
Target:  5'- -aGGCuGCCCUGAuccucucGguGGCCUAc-- -3'
miRNA:   3'- gaCCGuCGGGAUUu------CguCUGGAUugu -5'
33275 3' -52.4 NC_007605.1 + 133508 0.72 0.764979
Target:  5'- gCUGGCGcagagcGCCCUcccgugGAGGgGGACCUGACc -3'
miRNA:   3'- -GACCGU------CGGGA------UUUCgUCUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 127517 0.66 0.98106
Target:  5'- aUGGCaggugcacGGCCCcgugaaUGAAGCGGGCCccgGGCu -3'
miRNA:   3'- gACCG--------UCGGG------AUUUCGUCUGGa--UUGu -5'
33275 3' -52.4 NC_007605.1 + 126751 0.67 0.964465
Target:  5'- -gGGCAGacaUUGGAGCAGcACCUGAUc -3'
miRNA:   3'- gaCCGUCgg-GAUUUCGUC-UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 123167 0.76 0.567413
Target:  5'- aUGGggaacuuaUAGCCCUAGAGCAGGcCCUGAUg -3'
miRNA:   3'- gACC--------GUCGGGAUUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 114365 0.66 0.976354
Target:  5'- -aGGCAGUCCaGGGGCcacacaGCCUGACu -3'
miRNA:   3'- gaCCGUCGGGaUUUCGuc----UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 106477 0.67 0.95717
Target:  5'- -cGGCGGCU----GGCAGGCCU-GCAc -3'
miRNA:   3'- gaCCGUCGGgauuUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 96824 0.67 0.95717
Target:  5'- -aGGUGGCCCaGAuGguGAgCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGaUUuCguCU-GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 91435 0.69 0.899272
Target:  5'- -aGGCcgugaaGGCCCUAAGGgAGAUggCUGACAc -3'
miRNA:   3'- gaCCG------UCGGGAUUUCgUCUG--GAUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.