miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 36182 1.09 0.00574
Target:  5'- cCUGGCAGCCCUAAAGCAGACCUAACAu -3'
miRNA:   3'- -GACCGUCGGGAUUUCGUCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 64467 0.82 0.304837
Target:  5'- -gGGCAGCCCUGcAGCGGGCCaGGCc -3'
miRNA:   3'- gaCCGUCGGGAUuUCGUCUGGaUUGu -5'
33275 3' -52.4 NC_007605.1 + 48850 0.76 0.546647
Target:  5'- gCUGGCGGCCCcGAauccgGGCAGugCUGccGCAc -3'
miRNA:   3'- -GACCGUCGGGaUU-----UCGUCugGAU--UGU- -5'
33275 3' -52.4 NC_007605.1 + 123167 0.76 0.567413
Target:  5'- aUGGggaacuuaUAGCCCUAGAGCAGGcCCUGAUg -3'
miRNA:   3'- gACC--------GUCGGGAUUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 135020 0.76 0.587322
Target:  5'- uCUGGCAcgccgugGCCCUGAgcauGGCGG-CCUGGCAc -3'
miRNA:   3'- -GACCGU-------CGGGAUU----UCGUCuGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 47515 0.75 0.613699
Target:  5'- gCUGGCugucacggccguGGCCCUgcuccugauguuucuGAGGUGGACCUGACGu -3'
miRNA:   3'- -GACCG------------UCGGGA---------------UUUCGUCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 133864 0.74 0.68342
Target:  5'- -gGGCAGCCUggaggucuGGCAGguGCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGauu-----UCGUC--UGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 90315 0.74 0.704283
Target:  5'- -gGGCAGCCaCUGGuGCAGGCUguggAACAc -3'
miRNA:   3'- gaCCGUCGG-GAUUuCGUCUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 12317 0.73 0.714621
Target:  5'- -aGGCGGCCCUAcuGgGGACCgggggaggAACAg -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGa-------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 65130 0.73 0.755119
Target:  5'- -cGGCAGCCCcuucauccuuuUGAAGgAGGCCU-GCAa -3'
miRNA:   3'- gaCCGUCGGG-----------AUUUCgUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 51705 0.73 0.759077
Target:  5'- uUGGCGGCCCUggccucggugaGAAGCucgcguagccacacGGCCUGGCGu -3'
miRNA:   3'- gACCGUCGGGA-----------UUUCGu-------------CUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 144496 0.72 0.764979
Target:  5'- aCUGGCAGCC---GAGCAGAuUCUAAUg -3'
miRNA:   3'- -GACCGUCGGgauUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 133508 0.72 0.764979
Target:  5'- gCUGGCGcagagcGCCCUcccgugGAGGgGGACCUGACc -3'
miRNA:   3'- -GACCGU------CGGGA------UUUCgUCUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 32361 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 29292 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 23154 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 20085 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 17016 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 26223 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 84057 0.72 0.803053
Target:  5'- uCUGGCcuauGCCCgcGGGCAGGCCaugAAUAu -3'
miRNA:   3'- -GACCGu---CGGGauUUCGUCUGGa--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.