miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 71975 0.67 0.95275
Target:  5'- aCUGGCcucAGCCCUauuuaugauucugGAGGCGGGCacgCUGAUg -3'
miRNA:   3'- -GACCG---UCGGGA-------------UUUCGUCUG---GAUUGu -5'
33275 3' -52.4 NC_007605.1 + 32361 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 84057 0.72 0.803053
Target:  5'- uCUGGCcuauGCCCgcGGGCAGGCCaugAAUAu -3'
miRNA:   3'- -GACCGu---CGGGauUUCGUCUGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 161408 0.71 0.84933
Target:  5'- aCUGGCAGCgugacaaCCggacgggccuuGCAGACCUGGCu -3'
miRNA:   3'- -GACCGUCG-------GGauuu-------CGUCUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 69370 0.7 0.885468
Target:  5'- gUGGCAuCCCUGAAGgAGACCc---- -3'
miRNA:   3'- gACCGUcGGGAUUUCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 61284 0.69 0.899272
Target:  5'- -aGGCGGCUgU--AGCGGACCcaUAGCAg -3'
miRNA:   3'- gaCCGUCGGgAuuUCGUCUGG--AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 13948 0.69 0.912084
Target:  5'- -aGGCAGCCCcAAAGCGGguGCaguACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGgauUGU- -5'
33275 3' -52.4 NC_007605.1 + 64820 0.68 0.934658
Target:  5'- gUGGCGGCCUacaUGGAGC---CCUGGCAc -3'
miRNA:   3'- gACCGUCGGG---AUUUCGucuGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 2704 0.68 0.943484
Target:  5'- -cGGCGGCCCggcgccaaCAGGCCUuuCAg -3'
miRNA:   3'- gaCCGUCGGGauuuc---GUCUGGAuuGU- -5'
33275 3' -52.4 NC_007605.1 + 29292 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 26223 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 23154 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 48850 0.76 0.546647
Target:  5'- gCUGGCGGCCCcGAauccgGGCAGugCUGccGCAc -3'
miRNA:   3'- -GACCGUCGGGaUU-----UCGUCugGAU--UGU- -5'
33275 3' -52.4 NC_007605.1 + 47515 0.75 0.613699
Target:  5'- gCUGGCugucacggccguGGCCCUgcuccugauguuucuGAGGUGGACCUGACGu -3'
miRNA:   3'- -GACCG------------UCGGGA---------------UUUCGUCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 90315 0.74 0.704283
Target:  5'- -gGGCAGCCaCUGGuGCAGGCUguggAACAc -3'
miRNA:   3'- gaCCGUCGG-GAUUuCGUCUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 65130 0.73 0.755119
Target:  5'- -cGGCAGCCCcuucauccuuuUGAAGgAGGCCU-GCAa -3'
miRNA:   3'- gaCCGUCGGG-----------AUUUCgUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 51705 0.73 0.759077
Target:  5'- uUGGCGGCCCUggccucggugaGAAGCucgcguagccacacGGCCUGGCGu -3'
miRNA:   3'- gACCGUCGGGA-----------UUUCGu-------------CUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 144496 0.72 0.764979
Target:  5'- aCUGGCAGCC---GAGCAGAuUCUAAUg -3'
miRNA:   3'- -GACCGUCGGgauUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 17016 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 20085 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.