miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 36182 1.09 0.00574
Target:  5'- cCUGGCAGCCCUAAAGCAGACCUAACAu -3'
miRNA:   3'- -GACCGUCGGGAUUUCGUCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 52983 0.7 0.870704
Target:  5'- uCUGcGCccaaAGCCCUGAuggaAGACCUGGCAg -3'
miRNA:   3'- -GAC-CG----UCGGGAUUucg-UCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 48990 0.7 0.885468
Target:  5'- uCUGGCAGCCCaccgccGCAGAgCCgcaguuggAGCAg -3'
miRNA:   3'- -GACCGUCGGGauuu--CGUCU-GGa-------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 61362 0.66 0.98106
Target:  5'- -cGGCGGCCCc---GCGGACa-GACGu -3'
miRNA:   3'- gaCCGUCGGGauuuCGUCUGgaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 12317 0.73 0.714621
Target:  5'- -aGGCGGCCCUAcuGgGGACCgggggaggAACAg -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGa-------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 133508 0.72 0.764979
Target:  5'- gCUGGCGcagagcGCCCUcccgugGAGGgGGACCUGACc -3'
miRNA:   3'- -GACCGU------CGGGA------UUUCgUCUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 30731 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 27662 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 18455 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 9528 0.7 0.862976
Target:  5'- gUGGCuuucaUCCUGGAGCAGACUUuGCAg -3'
miRNA:   3'- gACCGuc---GGGAUUUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 168140 0.71 0.829904
Target:  5'- -aGGC-GCaCCUGGAGguGGuCCUGACAa -3'
miRNA:   3'- gaCCGuCG-GGAUUUCguCU-GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 21524 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 123167 0.76 0.567413
Target:  5'- aUGGggaacuuaUAGCCCUAGAGCAGGcCCUGAUg -3'
miRNA:   3'- gACC--------GUCGGGAUUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 65612 0.71 0.846857
Target:  5'- gUGGCAuCUCUGAGGCGGG-CUAGCGa -3'
miRNA:   3'- gACCGUcGGGAUUUCGUCUgGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 135020 0.76 0.587322
Target:  5'- uCUGGCAcgccgugGCCCUGAgcauGGCGG-CCUGGCAc -3'
miRNA:   3'- -GACCGU-------CGGGAUU----UCGUCuGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 24593 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 62723 0.7 0.855025
Target:  5'- -aGGCGGCCCUGGAc--GugCUGGCAu -3'
miRNA:   3'- gaCCGUCGGGAUUUcguCugGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 51447 0.7 0.885468
Target:  5'- -aGGUGGCCCcu-GGCAGGCCcaggGACu -3'
miRNA:   3'- gaCCGUCGGGauuUCGUCUGGa---UUGu -5'
33275 3' -52.4 NC_007605.1 + 133864 0.74 0.68342
Target:  5'- -gGGCAGCCUggaggucuGGCAGguGCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGauu-----UCGUC--UGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 33800 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.