Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33275 | 3' | -52.4 | NC_007605.1 | + | 5209 | 0.67 | 0.95717 |
Target: 5'- gUGGCacGGCCUgccAGGGCAGAgucCCUGGCc -3' miRNA: 3'- gACCG--UCGGGa--UUUCGUCU---GGAUUGu -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 166802 | 0.67 | 0.953164 |
Target: 5'- -gGGCAGgCCgcAGGCAGAggacugcugcUCUAGCAa -3' miRNA: 3'- gaCCGUCgGGauUUCGUCU----------GGAUUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 71975 | 0.67 | 0.95275 |
Target: 5'- aCUGGCcucAGCCCUauuuaugauucugGAGGCGGGCacgCUGAUg -3' miRNA: 3'- -GACCG---UCGGGA-------------UUUCGUCUG---GAUUGu -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 60327 | 0.68 | 0.948474 |
Target: 5'- -gGaGCAcGCCCUGGAGCuGggauacaGCCUGACGg -3' miRNA: 3'- gaC-CGU-CGGGAUUUCGuC-------UGGAUUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 53973 | 0.68 | 0.944414 |
Target: 5'- cCUGGCAGCCgccAAGUGGAUCcggGGCAu -3' miRNA: 3'- -GACCGUCGGgauUUCGUCUGGa--UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 2704 | 0.68 | 0.943484 |
Target: 5'- -cGGCGGCCCggcgccaaCAGGCCUuuCAg -3' miRNA: 3'- gaCCGUCGGGauuuc---GUCUGGAuuGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 84941 | 0.68 | 0.939663 |
Target: 5'- -gGGUcaGGUCCUGGGGCAGGCagUAGCu -3' miRNA: 3'- gaCCG--UCGGGAUUUCGUCUGg-AUUGu -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 64820 | 0.68 | 0.934658 |
Target: 5'- gUGGCGGCCUacaUGGAGC---CCUGGCAc -3' miRNA: 3'- gACCGUCGGG---AUUUCGucuGGAUUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 13948 | 0.69 | 0.912084 |
Target: 5'- -aGGCAGCCCcAAAGCGGguGCaguACAg -3' miRNA: 3'- gaCCGUCGGGaUUUCGUC--UGgauUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 56680 | 0.69 | 0.905803 |
Target: 5'- -aGGCGGCCC----GCAGacGCCUGACc -3' miRNA: 3'- gaCCGUCGGGauuuCGUC--UGGAUUGu -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 61284 | 0.69 | 0.899272 |
Target: 5'- -aGGCGGCUgU--AGCGGACCcaUAGCAg -3' miRNA: 3'- gaCCGUCGGgAuuUCGUCUGG--AUUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 20251 | 0.69 | 0.899272 |
Target: 5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3' miRNA: 3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 29458 | 0.69 | 0.899272 |
Target: 5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3' miRNA: 3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 91435 | 0.69 | 0.899272 |
Target: 5'- -aGGCcgugaaGGCCCUAAGGgAGAUggCUGACAc -3' miRNA: 3'- gaCCG------UCGGGAUUUCgUCUG--GAUUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 32527 | 0.69 | 0.899272 |
Target: 5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3' miRNA: 3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 26389 | 0.69 | 0.899272 |
Target: 5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3' miRNA: 3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 23320 | 0.69 | 0.899272 |
Target: 5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3' miRNA: 3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 17182 | 0.69 | 0.899272 |
Target: 5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3' miRNA: 3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 14114 | 0.69 | 0.899272 |
Target: 5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3' miRNA: 3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5' |
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33275 | 3' | -52.4 | NC_007605.1 | + | 48990 | 0.7 | 0.885468 |
Target: 5'- uCUGGCAGCCCaccgccGCAGAgCCgcaguuggAGCAg -3' miRNA: 3'- -GACCGUCGGGauuu--CGUCU-GGa-------UUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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