miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 11260 0.66 0.978804
Target:  5'- uUGGCGGcCCCUAAGGgGGGgaCUAAg- -3'
miRNA:   3'- gACCGUC-GGGAUUUCgUCUg-GAUUgu -5'
33275 3' -52.4 NC_007605.1 + 81496 0.66 0.978804
Target:  5'- cCUGGgAGCcaucCCUGAcacaggcugcggGGCAGGCCUuuGCAc -3'
miRNA:   3'- -GACCgUCG----GGAUU------------UCGUCUGGAu-UGU- -5'
33275 3' -52.4 NC_007605.1 + 114365 0.66 0.976354
Target:  5'- -aGGCAGUCCaGGGGCcacacaGCCUGACu -3'
miRNA:   3'- gaCCGUCGGGaUUUCGuc----UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 65307 0.66 0.970842
Target:  5'- uCUGGCGGUgCgggcacAGCGGGCC-GACAc -3'
miRNA:   3'- -GACCGUCGgGauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 54523 0.67 0.967765
Target:  5'- -cGGUAGCCgCggggguGGCGGGCCaAGCGu -3'
miRNA:   3'- gaCCGUCGG-Gauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 35237 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 32168 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 29099 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 54028 0.67 0.964465
Target:  5'- -aGGCcGCCCUGgcccGGGCAGcgGCCgggAACGg -3'
miRNA:   3'- gaCCGuCGGGAU----UUCGUC--UGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 22961 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 154142 0.67 0.964465
Target:  5'- gUGGaGGCCCUGAGccccgccaaccuGCAGGCCcUGGCc -3'
miRNA:   3'- gACCgUCGGGAUUU------------CGUCUGG-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 26030 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 126751 0.67 0.964465
Target:  5'- -gGGCAGacaUUGGAGCAGcACCUGAUc -3'
miRNA:   3'- gaCCGUCgg-GAUUUCGUC-UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 164982 0.67 0.960935
Target:  5'- cCUGa-AGCCCguGAGCuGGCCUGACGa -3'
miRNA:   3'- -GACcgUCGGGauUUCGuCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 96824 0.67 0.95717
Target:  5'- -aGGUGGCCCaGAuGguGAgCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGaUUuCguCU-GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 5209 0.67 0.95717
Target:  5'- gUGGCacGGCCUgccAGGGCAGAgucCCUGGCc -3'
miRNA:   3'- gACCG--UCGGGa--UUUCGUCU---GGAUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.