Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 159029 | 0.67 | 0.883017 |
Target: 5'- -gGGCGGAcGCGGUcagccccggccaGgcccugcCCCCGGAUGGg -3' miRNA: 3'- gaUCGCCUaCGUCG------------Ua------GGGGCCUACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 151012 | 0.68 | 0.829153 |
Target: 5'- gCUGGCGag-GCGGCGUCCgCGGGc-- -3' miRNA: 3'- -GAUCGCcuaCGUCGUAGGgGCCUacu -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 136496 | 0.66 | 0.909061 |
Target: 5'- -gGGcCGGA-GCGGUcgCCCCGGccGGc -3' miRNA: 3'- gaUC-GCCUaCGUCGuaGGGGCCuaCU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 135763 | 0.67 | 0.88987 |
Target: 5'- -gAGgGGAUccaggugaagGCAgGCGUCCuuGGGUGGg -3' miRNA: 3'- gaUCgCCUA----------CGU-CGUAGGggCCUACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 109394 | 0.73 | 0.566318 |
Target: 5'- uUGGCGGAUGC---GUCCCCGcaGAUGAg -3' miRNA: 3'- gAUCGCCUACGucgUAGGGGC--CUACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 109003 | 0.67 | 0.853444 |
Target: 5'- -cAGUGGggGUGGCAagCCCGGGaGAg -3' miRNA: 3'- gaUCGCCuaCGUCGUagGGGCCUaCU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 108011 | 0.73 | 0.536396 |
Target: 5'- -gAGCGGcgGCGGUugcgCCCGGGUGAu -3' miRNA: 3'- gaUCGCCuaCGUCGuag-GGGCCUACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 105214 | 0.68 | 0.837438 |
Target: 5'- -cAGCGGccgcGUGUAGgAgaaCCCGGGUGAc -3' miRNA: 3'- gaUCGCC----UACGUCgUag-GGGCCUACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 88543 | 0.72 | 0.617014 |
Target: 5'- -gGGCGGcgGCuccuGGUAUCCCUGGuAUGGa -3' miRNA: 3'- gaUCGCCuaCG----UCGUAGGGGCC-UACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 88511 | 0.66 | 0.91441 |
Target: 5'- cCUGGgGGGccgGCGGCuccugguAUCCCUGGuAUGGa -3' miRNA: 3'- -GAUCgCCUa--CGUCG-------UAGGGGCC-UACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 85098 | 0.67 | 0.883017 |
Target: 5'- aCUGGCGuGggGCAGCuGUUUCCGG-UGGc -3' miRNA: 3'- -GAUCGC-CuaCGUCG-UAGGGGCCuACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 77746 | 0.67 | 0.88987 |
Target: 5'- aCUGGUGGAgggGCugAGUGUCUCUGGGuuUGAa -3' miRNA: 3'- -GAUCGCCUa--CG--UCGUAGGGGCCU--ACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 76293 | 0.66 | 0.896497 |
Target: 5'- --cGCGGcgGCGGCuUCCCUGacUGAa -3' miRNA: 3'- gauCGCCuaCGUCGuAGGGGCcuACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 69328 | 0.69 | 0.775053 |
Target: 5'- -gAGCGGAgacGCAGCAUUuucugcgCCCGGG-GAg -3' miRNA: 3'- gaUCGCCUa--CGUCGUAG-------GGGCCUaCU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 66413 | 0.73 | 0.55629 |
Target: 5'- -aGGUGGGUGguGUGUgCCCGGggGAu -3' miRNA: 3'- gaUCGCCUACguCGUAgGGGCCuaCU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 63130 | 0.66 | 0.902895 |
Target: 5'- -gGGcCGGAggggGCAGCAgCCCCGcGAUu- -3' miRNA: 3'- gaUC-GCCUa---CGUCGUaGGGGC-CUAcu -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 60335 | 0.74 | 0.487859 |
Target: 5'- -gAGCGGGUGgAGCAcgCCCUGGAgcUGGg -3' miRNA: 3'- gaUCGCCUACgUCGUa-GGGGCCU--ACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 60306 | 0.66 | 0.920687 |
Target: 5'- cCUGGCGGcgGCgucccGGCAcacaUCCUGGAUGc -3' miRNA: 3'- -GAUCGCCuaCG-----UCGUa---GGGGCCUACu -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 59673 | 0.72 | 0.606823 |
Target: 5'- aUGGCGGggGC-GUuuGUCCCaCGGGUGAg -3' miRNA: 3'- gAUCGCCuaCGuCG--UAGGG-GCCUACU- -5' |
|||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 59242 | 0.66 | 0.920687 |
Target: 5'- gCUGGCGGcgGCAGCcgCCgaGaGAUa- -3' miRNA: 3'- -GAUCGCCuaCGUCGuaGGggC-CUAcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home