Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 66413 | 0.73 | 0.55629 |
Target: 5'- -aGGUGGGUGguGUGUgCCCGGggGAu -3' miRNA: 3'- gaUCGCCUACguCGUAgGGGCCuaCU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 105214 | 0.68 | 0.837438 |
Target: 5'- -cAGCGGccgcGUGUAGgAgaaCCCGGGUGAc -3' miRNA: 3'- gaUCGCC----UACGUCgUag-GGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 40062 | 0.67 | 0.88987 |
Target: 5'- --cGgGGAUGCuGCAUCcgcuaguccgaCCUGGGUGGg -3' miRNA: 3'- gauCgCCUACGuCGUAG-----------GGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 77746 | 0.67 | 0.88987 |
Target: 5'- aCUGGUGGAgggGCugAGUGUCUCUGGGuuUGAa -3' miRNA: 3'- -GAUCGCCUa--CG--UCGUAGGGGCCU--ACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 76293 | 0.66 | 0.896497 |
Target: 5'- --cGCGGcgGCGGCuUCCCUGacUGAa -3' miRNA: 3'- gauCGCCuaCGUCGuAGGGGCcuACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 52417 | 0.66 | 0.900364 |
Target: 5'- gUGGCGGGUgagGCGGCGcgcgucuUCCCCgucguugcugccgcGGGUGGu -3' miRNA: 3'- gAUCGCCUA---CGUCGU-------AGGGG--------------CCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 136496 | 0.66 | 0.909061 |
Target: 5'- -gGGcCGGA-GCGGUcgCCCCGGccGGc -3' miRNA: 3'- gaUC-GCCUaCGUCGuaGGGGCCuaCU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 59242 | 0.66 | 0.920687 |
Target: 5'- gCUGGCGGcgGCAGCcgCCgaGaGAUa- -3' miRNA: 3'- -GAUCGCCuaCGUCGuaGGggC-CUAcu -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 60306 | 0.66 | 0.920687 |
Target: 5'- cCUGGCGGcgGCgucccGGCAcacaUCCUGGAUGc -3' miRNA: 3'- -GAUCGCCuaCG-----UCGUa---GGGGCCUACu -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 69328 | 0.69 | 0.775053 |
Target: 5'- -gAGCGGAgacGCAGCAUUuucugcgCCCGGG-GAg -3' miRNA: 3'- gaUCGCCUa--CGUCGUAG-------GGGCCUaCU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 41636 | 0.7 | 0.71822 |
Target: 5'- --uGCaGAUGCAG-GUCUCCGGGUGGg -3' miRNA: 3'- gauCGcCUACGUCgUAGGGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 32372 | 0.71 | 0.657813 |
Target: 5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 109394 | 0.73 | 0.566318 |
Target: 5'- uUGGCGGAUGC---GUCCCCGcaGAUGAg -3' miRNA: 3'- gAUCGCCUACGucgUAGGGGC--CUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 59673 | 0.72 | 0.606823 |
Target: 5'- aUGGCGGggGC-GUuuGUCCCaCGGGUGAg -3' miRNA: 3'- gAUCGCCuaCGuCG--UAGGG-GCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 13959 | 0.71 | 0.646604 |
Target: 5'- -aAGCGGGUGCAGUacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG-------UAGGGGCC--UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 17027 | 0.71 | 0.657813 |
Target: 5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 20096 | 0.71 | 0.657813 |
Target: 5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 23165 | 0.71 | 0.657813 |
Target: 5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 26234 | 0.71 | 0.657813 |
Target: 5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 29303 | 0.71 | 0.657813 |
Target: 5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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