miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 5' -56.1 NC_007605.1 + 49785 0.68 0.845538
Target:  5'- -aGGCGGcgGCAGUcgCCCCcGAa-- -3'
miRNA:   3'- gaUCGCCuaCGUCGuaGGGGcCUacu -5'
33276 5' -56.1 NC_007605.1 + 109003 0.67 0.853444
Target:  5'- -cAGUGGggGUGGCAagCCCGGGaGAg -3'
miRNA:   3'- gaUCGCCuaCGUCGUagGGGCCUaCU- -5'
33276 5' -56.1 NC_007605.1 + 159029 0.67 0.883017
Target:  5'- -gGGCGGAcGCGGUcagccccggccaGgcccugcCCCCGGAUGGg -3'
miRNA:   3'- gaUCGCCUaCGUCG------------Ua------GGGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 85098 0.67 0.883017
Target:  5'- aCUGGCGuGggGCAGCuGUUUCCGG-UGGc -3'
miRNA:   3'- -GAUCGC-CuaCGUCG-UAGGGGCCuACU- -5'
33276 5' -56.1 NC_007605.1 + 135763 0.67 0.88987
Target:  5'- -gAGgGGAUccaggugaagGCAgGCGUCCuuGGGUGGg -3'
miRNA:   3'- gaUCgCCUA----------CGU-CGUAGGggCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 63130 0.66 0.902895
Target:  5'- -gGGcCGGAggggGCAGCAgCCCCGcGAUu- -3'
miRNA:   3'- gaUC-GCCUa---CGUCGUaGGGGC-CUAcu -5'
33276 5' -56.1 NC_007605.1 + 151012 0.68 0.829153
Target:  5'- gCUGGCGag-GCGGCGUCCgCGGGc-- -3'
miRNA:   3'- -GAUCGCcuaCGUCGUAGGgGCCUacu -5'
33276 5' -56.1 NC_007605.1 + 38430 0.71 0.667982
Target:  5'- cCUGGCGGuaGUGCAGUGUCCCUGcugcccAUGGa -3'
miRNA:   3'- -GAUCGCC--UACGUCGUAGGGGCc-----UACU- -5'
33276 5' -56.1 NC_007605.1 + 88543 0.72 0.617014
Target:  5'- -gGGCGGcgGCuccuGGUAUCCCUGGuAUGGa -3'
miRNA:   3'- gaUCGCCuaCG----UCGUAGGGGCC-UACU- -5'
33276 5' -56.1 NC_007605.1 + 49665 0.73 0.560295
Target:  5'- -cAGCGGAUGCGGCGgccugagCCUgcuggacggggguggCGGAUGAc -3'
miRNA:   3'- gaUCGCCUACGUCGUa------GGG---------------GCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 108011 0.73 0.536396
Target:  5'- -gAGCGGcgGCGGUugcgCCCGGGUGAu -3'
miRNA:   3'- gaUCGCCuaCGUCGuag-GGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 60335 0.74 0.487859
Target:  5'- -gAGCGGGUGgAGCAcgCCCUGGAgcUGGg -3'
miRNA:   3'- gaUCGCCUACgUCGUa-GGGGCCU--ACU- -5'
33276 5' -56.1 NC_007605.1 + 40081 0.75 0.459746
Target:  5'- -cGGCGGAUGCAGCGaCCCCcagaGGAg-- -3'
miRNA:   3'- gaUCGCCUACGUCGUaGGGG----CCUacu -5'
33276 5' -56.1 NC_007605.1 + 40254 1.09 0.00275
Target:  5'- aCUAGCGGAUGCAGCAUCCCCGGAUGAg -3'
miRNA:   3'- -GAUCGCCUACGUCGUAGGGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 88511 0.66 0.91441
Target:  5'- cCUGGgGGGccgGCGGCuccugguAUCCCUGGuAUGGa -3'
miRNA:   3'- -GAUCgCCUa--CGUCG-------UAGGGGCC-UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.