Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 5' | -56.1 | NC_007605.1 | + | 40081 | 0.75 | 0.459746 |
Target: 5'- -cGGCGGAUGCAGCGaCCCCcagaGGAg-- -3' miRNA: 3'- gaUCGCCUACGUCGUaGGGG----CCUacu -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 135763 | 0.67 | 0.88987 |
Target: 5'- -gAGgGGAUccaggugaagGCAgGCGUCCuuGGGUGGg -3' miRNA: 3'- gaUCgCCUA----------CGU-CGUAGGggCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 109003 | 0.67 | 0.853444 |
Target: 5'- -cAGUGGggGUGGCAagCCCGGGaGAg -3' miRNA: 3'- gaUCGCCuaCGUCGUagGGGCCUaCU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 49785 | 0.68 | 0.845538 |
Target: 5'- -aGGCGGcgGCAGUcgCCCCcGAa-- -3' miRNA: 3'- gaUCGCCuaCGUCGuaGGGGcCUacu -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 38430 | 0.71 | 0.667982 |
Target: 5'- cCUGGCGGuaGUGCAGUGUCCCUGcugcccAUGGa -3' miRNA: 3'- -GAUCGCC--UACGUCGUAGGGGCc-----UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 88543 | 0.72 | 0.617014 |
Target: 5'- -gGGCGGcgGCuccuGGUAUCCCUGGuAUGGa -3' miRNA: 3'- gaUCGCCuaCG----UCGUAGGGGCC-UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 63130 | 0.66 | 0.902895 |
Target: 5'- -gGGcCGGAggggGCAGCAgCCCCGcGAUu- -3' miRNA: 3'- gaUC-GCCUa---CGUCGUaGGGGC-CUAcu -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 85098 | 0.67 | 0.883017 |
Target: 5'- aCUGGCGuGggGCAGCuGUUUCCGG-UGGc -3' miRNA: 3'- -GAUCGC-CuaCGUCG-UAGGGGCCuACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 151012 | 0.68 | 0.829153 |
Target: 5'- gCUGGCGag-GCGGCGUCCgCGGGc-- -3' miRNA: 3'- -GAUCGCcuaCGUCGUAGGgGCCUacu -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 49665 | 0.73 | 0.560295 |
Target: 5'- -cAGCGGAUGCGGCGgccugagCCUgcuggacggggguggCGGAUGAc -3' miRNA: 3'- gaUCGCCUACGUCGUa------GGG---------------GCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 60335 | 0.74 | 0.487859 |
Target: 5'- -gAGCGGGUGgAGCAcgCCCUGGAgcUGGg -3' miRNA: 3'- gaUCGCCUACgUCGUa-GGGGCCU--ACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 88511 | 0.66 | 0.91441 |
Target: 5'- cCUGGgGGGccgGCGGCuccugguAUCCCUGGuAUGGa -3' miRNA: 3'- -GAUCgCCUa--CGUCG-------UAGGGGCC-UACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 108011 | 0.73 | 0.536396 |
Target: 5'- -gAGCGGcgGCGGUugcgCCCGGGUGAu -3' miRNA: 3'- gaUCGCCuaCGUCGuag-GGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 159029 | 0.67 | 0.883017 |
Target: 5'- -gGGCGGAcGCGGUcagccccggccaGgcccugcCCCCGGAUGGg -3' miRNA: 3'- gaUCGCCUaCGUCG------------Ua------GGGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 40254 | 1.09 | 0.00275 |
Target: 5'- aCUAGCGGAUGCAGCAUCCCCGGAUGAg -3' miRNA: 3'- -GAUCGCCUACGUCGUAGGGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 77746 | 0.67 | 0.88987 |
Target: 5'- aCUGGUGGAgggGCugAGUGUCUCUGGGuuUGAa -3' miRNA: 3'- -GAUCGCCUa--CG--UCGUAGGGGCCU--ACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 40062 | 0.67 | 0.88987 |
Target: 5'- --cGgGGAUGCuGCAUCcgcuaguccgaCCUGGGUGGg -3' miRNA: 3'- gauCgCCUACGuCGUAG-----------GGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 105214 | 0.68 | 0.837438 |
Target: 5'- -cAGCGGccgcGUGUAGgAgaaCCCGGGUGAc -3' miRNA: 3'- gaUCGCC----UACGUCgUag-GGGCCUACU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 69328 | 0.69 | 0.775053 |
Target: 5'- -gAGCGGAgacGCAGCAUUuucugcgCCCGGG-GAg -3' miRNA: 3'- gaUCGCCUa--CGUCGUAG-------GGGCCUaCU- -5' |
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33276 | 5' | -56.1 | NC_007605.1 | + | 23165 | 0.71 | 0.657813 |
Target: 5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3' miRNA: 3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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