miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 5' -56.1 NC_007605.1 + 23165 0.71 0.657813
Target:  5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3'
miRNA:   3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5'
33276 5' -56.1 NC_007605.1 + 26234 0.71 0.657813
Target:  5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3'
miRNA:   3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5'
33276 5' -56.1 NC_007605.1 + 29303 0.71 0.657813
Target:  5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3'
miRNA:   3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5'
33276 5' -56.1 NC_007605.1 + 32372 0.71 0.657813
Target:  5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3'
miRNA:   3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5'
33276 5' -56.1 NC_007605.1 + 17027 0.71 0.657813
Target:  5'- -aAGCGGGUGCAGUaacagguaAUCUCUGGuaGUGAu -3'
miRNA:   3'- gaUCGCCUACGUCG--------UAGGGGCC--UACU- -5'
33276 5' -56.1 NC_007605.1 + 13959 0.71 0.646604
Target:  5'- -aAGCGGGUGCAGUacagguaAUCUCUGGuaGUGAu -3'
miRNA:   3'- gaUCGCCUACGUCG-------UAGGGGCC--UACU- -5'
33276 5' -56.1 NC_007605.1 + 88543 0.72 0.617014
Target:  5'- -gGGCGGcgGCuccuGGUAUCCCUGGuAUGGa -3'
miRNA:   3'- gaUCGCCuaCG----UCGUAGGGGCC-UACU- -5'
33276 5' -56.1 NC_007605.1 + 59673 0.72 0.606823
Target:  5'- aUGGCGGggGC-GUuuGUCCCaCGGGUGAg -3'
miRNA:   3'- gAUCGCCuaCGuCG--UAGGG-GCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 109394 0.73 0.566318
Target:  5'- uUGGCGGAUGC---GUCCCCGcaGAUGAg -3'
miRNA:   3'- gAUCGCCUACGucgUAGGGGC--CUACU- -5'
33276 5' -56.1 NC_007605.1 + 49665 0.73 0.560295
Target:  5'- -cAGCGGAUGCGGCGgccugagCCUgcuggacggggguggCGGAUGAc -3'
miRNA:   3'- gaUCGCCUACGUCGUa------GGG---------------GCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 66413 0.73 0.55629
Target:  5'- -aGGUGGGUGguGUGUgCCCGGggGAu -3'
miRNA:   3'- gaUCGCCUACguCGUAgGGGCCuaCU- -5'
33276 5' -56.1 NC_007605.1 + 108011 0.73 0.536396
Target:  5'- -gAGCGGcgGCGGUugcgCCCGGGUGAu -3'
miRNA:   3'- gaUCGCCuaCGUCGuag-GGGCCUACU- -5'
33276 5' -56.1 NC_007605.1 + 60335 0.74 0.487859
Target:  5'- -gAGCGGGUGgAGCAcgCCCUGGAgcUGGg -3'
miRNA:   3'- gaUCGCCUACgUCGUa-GGGGCCU--ACU- -5'
33276 5' -56.1 NC_007605.1 + 40081 0.75 0.459746
Target:  5'- -cGGCGGAUGCAGCGaCCCCcagaGGAg-- -3'
miRNA:   3'- gaUCGCCUACGUCGUaGGGG----CCUacu -5'
33276 5' -56.1 NC_007605.1 + 40254 1.09 0.00275
Target:  5'- aCUAGCGGAUGCAGCAUCCCCGGAUGAg -3'
miRNA:   3'- -GAUCGCCUACGUCGUAGGGGCCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.