miRNA display CGI


Results 61 - 80 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 17086 0.69 0.418477
Target:  5'- aGGGGCGGgagggGGCUgGG-CCUCaCCCUCg -3'
miRNA:   3'- gCCCCGCC-----UCGGgUUaGGAGgGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 32430 0.69 0.418477
Target:  5'- aGGGGCGGgagggGGCUgGG-CCUCaCCCUCg -3'
miRNA:   3'- gCCCCGCC-----UCGGgUUaGGAGgGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 155215 0.69 0.418477
Target:  5'- uGGGGa--AGCCC--UCCUCCCCCa- -3'
miRNA:   3'- gCCCCgccUCGGGuuAGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 14017 0.69 0.418477
Target:  5'- aGGGGCGGgagggGGCUgGG-CCUCaCCCUCg -3'
miRNA:   3'- gCCCCGCC-----UCGGgUUaGGAGgGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 23223 0.69 0.418477
Target:  5'- aGGGGCGGgagggGGCUgGG-CCUCaCCCUCg -3'
miRNA:   3'- gCCCCGCC-----UCGGgUUaGGAGgGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 35297 0.69 0.418477
Target:  5'- cCGaGGGUGaGGCCCAG-CC-CCCUCUCg -3'
miRNA:   3'- -GC-CCCGCcUCGGGUUaGGaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 75733 0.69 0.410253
Target:  5'- gGGGGUGGuugaugGGaCCCuuGUCCUCCUCCa- -3'
miRNA:   3'- gCCCCGCC------UC-GGGu-UAGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 59190 0.69 0.410253
Target:  5'- uGGGGCGGGgaggacGCCUuGUCgC-CCCCCUUc -3'
miRNA:   3'- gCCCCGCCU------CGGGuUAG-GaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 169000 0.69 0.410253
Target:  5'- aGGGGCccaccGGGCCCGcgaCggCCCCCUCg -3'
miRNA:   3'- gCCCCGc----CUCGGGUuagGa-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 159520 0.69 0.40213
Target:  5'- cCGGGGCaccuccGGGcucuCCCGGgacgCCUCCUCCUCg -3'
miRNA:   3'- -GCCCCG------CCUc---GGGUUa---GGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 169711 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 170771 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 171308 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 170248 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 71618 0.7 0.370681
Target:  5'- gCGuGGGcCGGAGUUgGAucuucaUCCUCCUCCUCu -3'
miRNA:   3'- -GC-CCC-GCCUCGGgUU------AGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 49528 0.7 0.355599
Target:  5'- --cGGCcGuAGCCCAGUCCgcgaCCCCCUCu -3'
miRNA:   3'- gccCCGcC-UCGGGUUAGGa---GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 51098 0.7 0.348221
Target:  5'- aGGGuuGGugccuucacagaAGCCCAGUUaUCCCCCUCa -3'
miRNA:   3'- gCCCcgCC------------UCGGGUUAGgAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 85624 0.71 0.32675
Target:  5'- gGGGaGUGGGGCCUAugCCUCCCaCCg- -3'
miRNA:   3'- gCCC-CGCCUCGGGUuaGGAGGG-GGag -5'
33277 5' -63.8 NC_007605.1 + 151255 0.71 0.306276
Target:  5'- uGGGGCcgccuGAGCCC-AUCCUCgCCCa- -3'
miRNA:   3'- gCCCCGc----CUCGGGuUAGGAGgGGGag -5'
33277 5' -63.8 NC_007605.1 + 119844 0.71 0.299673
Target:  5'- uGGGGcCGGAGCCUuauaaaagaCUUCCaCCCUCu -3'
miRNA:   3'- gCCCC-GCCUCGGGuua------GGAGG-GGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.