miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 24857 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 40382 0.68 0.469834
Target:  5'- uCGGcGCGGGGuCCCAGgaccacgCCcCUCCCUCa -3'
miRNA:   3'- -GCCcCGCCUC-GGGUUa------GGaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 18719 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 34064 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 27926 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 21788 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 15650 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 12581 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 100204 0.68 0.469834
Target:  5'- uGGcGGaagGGAGUUCAGggaCCUCCCCUUCu -3'
miRNA:   3'- gCC-CCg--CCUCGGGUUa--GGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 91748 0.68 0.461047
Target:  5'- gCGGGGCcucGGCCCuggccUCUUCCCgCUCg -3'
miRNA:   3'- -GCCCCGcc-UCGGGuu---AGGAGGGgGAG- -5'
33277 5' -63.8 NC_007605.1 + 144309 0.68 0.449755
Target:  5'- uGGGGCGGcAGCCUcuaacuuuGGcuguggccucuauuUCCUCCCUUUCc -3'
miRNA:   3'- gCCCCGCC-UCGGG--------UU--------------AGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 39810 0.68 0.441174
Target:  5'- gGGGGCGuGguccccuggaccccAGCCCcgccGAUcCCUCCCCCa- -3'
miRNA:   3'- gCCCCGC-C--------------UCGGG----UUA-GGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 150209 0.69 0.435222
Target:  5'- gGGGGCGGgcgacggugcGGcCCCAAUacaaCUCUCCgCUCg -3'
miRNA:   3'- gCCCCGCC----------UC-GGGUUAg---GAGGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 171577 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 166483 0.69 0.426801
Target:  5'- uCGGGGCGGAcGCC---UCCUCCCa--- -3'
miRNA:   3'- -GCCCCGCCU-CGGguuAGGAGGGggag -5'
33277 5' -63.8 NC_007605.1 + 169979 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 170517 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 171039 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 17086 0.69 0.418477
Target:  5'- aGGGGCGGgagggGGCUgGG-CCUCaCCCUCg -3'
miRNA:   3'- gCCCCGCC-----UCGGgUUaGGAGgGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 14017 0.69 0.418477
Target:  5'- aGGGGCGGgagggGGCUgGG-CCUCaCCCUCg -3'
miRNA:   3'- gCCCCGCC-----UCGGgUUaGGAGgGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.