miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 156187 0.67 0.542889
Target:  5'- aGGGGUgguggaugugcgGGGGCCuCAG-CC-CCCCCUg -3'
miRNA:   3'- gCCCCG------------CCUCGG-GUUaGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 63019 0.67 0.542889
Target:  5'- aGGGGCaGAcGCCCAG-CCaCCCCUg- -3'
miRNA:   3'- gCCCCGcCU-CGGGUUaGGaGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 137357 0.67 0.533524
Target:  5'- aGGGGUauccAGCCCuugcgccgCCUCCCCCa- -3'
miRNA:   3'- gCCCCGcc--UCGGGuua-----GGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 49847 0.67 0.524218
Target:  5'- uGGGGCGGuGUCguggGGUUgUCCCCCg- -3'
miRNA:   3'- gCCCCGCCuCGGg---UUAGgAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 85268 0.67 0.514974
Target:  5'- uCGGGG-GGcGCCCAcUCCcacgccaCCUCCUCa -3'
miRNA:   3'- -GCCCCgCCuCGGGUuAGGa------GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 85208 0.67 0.514974
Target:  5'- uCGGGG-GGcGCCCAcUCCcacgccaCCUCCUCa -3'
miRNA:   3'- -GCCCCgCCuCGGGUuAGGa------GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 106038 0.68 0.496691
Target:  5'- gGGGGCGG-GCuCUAcgCCUUCCUC-Cg -3'
miRNA:   3'- gCCCCGCCuCG-GGUuaGGAGGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 166403 0.68 0.496691
Target:  5'- gGGGGagGGAGCCCG-UCaUUCCCgUCg -3'
miRNA:   3'- gCCCCg-CCUCGGGUuAGgAGGGGgAG- -5'
33277 5' -63.8 NC_007605.1 + 25304 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 34511 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 28373 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 16097 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 19166 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 13028 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 31442 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 22235 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 152089 0.68 0.487659
Target:  5'- cCGGcugcuaccuacuGGCGGcAGUCCuGAUCgUCCUCCUCa -3'
miRNA:   3'- -GCC------------CCGCC-UCGGG-UUAGgAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 82096 0.68 0.487659
Target:  5'- gGGGGCauccgcGGCCC-AUUUUCUCCCUCa -3'
miRNA:   3'- gCCCCGcc----UCGGGuUAGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 100347 0.68 0.478706
Target:  5'- gGGGaGCGGAGCCCcgccgcuGUCUUCUaugCCCg- -3'
miRNA:   3'- gCCC-CGCCUCGGGu------UAGGAGG---GGGag -5'
33277 5' -63.8 NC_007605.1 + 100204 0.68 0.469834
Target:  5'- uGGcGGaagGGAGUUCAGggaCCUCCCCUUCu -3'
miRNA:   3'- gCC-CCg--CCUCGGGUUa--GGAGGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.