miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 141044 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141146 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141248 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141350 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141859 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141757 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141656 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141554 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141452 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 143812 0.72 0.262365
Target:  5'- aGGGGCGGAGCUUAGgauaCCUCCaggauaauggaaCCCUa -3'
miRNA:   3'- gCCCCGCCUCGGGUUa---GGAGG------------GGGAg -5'
33277 5' -63.8 NC_007605.1 + 40996 0.72 0.262365
Target:  5'- aGGGGCGGAGCUUAGgauaCCUCCaggauaauggaaCCCUa -3'
miRNA:   3'- gCCCCGCCUCGGGUUa---GGAGG------------GGGAg -5'
33277 5' -63.8 NC_007605.1 + 39972 0.72 0.274364
Target:  5'- gGGGGCuGGGGuCCCGGgacgCCCCCUCc -3'
miRNA:   3'- gCCCCG-CCUC-GGGUUaggaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 40479 0.72 0.274364
Target:  5'- uGGuGGCucGGCCgCGGUCCUCCCCCg- -3'
miRNA:   3'- gCC-CCGccUCGG-GUUAGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 40011 0.72 0.274364
Target:  5'- gCGGGGCuGGGGUCCAGgggaCCacgCCCCCa- -3'
miRNA:   3'- -GCCCCG-CCUCGGGUUa---GGa--GGGGGag -5'
33277 5' -63.8 NC_007605.1 + 104260 0.72 0.280527
Target:  5'- gGGGGUGGcAGCCC---CCUCCUCCa- -3'
miRNA:   3'- gCCCCGCC-UCGGGuuaGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 119844 0.71 0.299673
Target:  5'- uGGGGcCGGAGCCUuauaaaagaCUUCCaCCCUCu -3'
miRNA:   3'- gCCCC-GCCUCGGGuua------GGAGG-GGGAG- -5'
33277 5' -63.8 NC_007605.1 + 151255 0.71 0.306276
Target:  5'- uGGGGCcgccuGAGCCC-AUCCUCgCCCa- -3'
miRNA:   3'- gCCCCGc----CUCGGGuUAGGAGgGGGag -5'
33277 5' -63.8 NC_007605.1 + 85624 0.71 0.32675
Target:  5'- gGGGaGUGGGGCCUAugCCUCCCaCCg- -3'
miRNA:   3'- gCCC-CGCCUCGGGUuaGGAGGG-GGag -5'
33277 5' -63.8 NC_007605.1 + 51098 0.7 0.348221
Target:  5'- aGGGuuGGugccuucacagaAGCCCAGUUaUCCCCCUCa -3'
miRNA:   3'- gCCCcgCC------------UCGGGUUAGgAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 49528 0.7 0.355599
Target:  5'- --cGGCcGuAGCCCAGUCCgcgaCCCCCUCu -3'
miRNA:   3'- gccCCGcC-UCGGGUUAGGa---GGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.