miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 156187 0.67 0.542889
Target:  5'- aGGGGUgguggaugugcgGGGGCCuCAG-CC-CCCCCUg -3'
miRNA:   3'- gCCCCG------------CCUCGG-GUUaGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 40676 0.67 0.552307
Target:  5'- gGGuaGGCGGAGCCuCAGgagggUCCCCUCc -3'
miRNA:   3'- gCC--CCGCCUCGG-GUUagga-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 40449 0.67 0.552307
Target:  5'- aCGGGGCGcgcuGGGCCgCGG-CUgCCCCCUg -3'
miRNA:   3'- -GCCCCGC----CUCGG-GUUaGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 63019 0.67 0.542889
Target:  5'- aGGGGCaGAcGCCCAG-CCaCCCCUg- -3'
miRNA:   3'- gCCCCGcCU-CGGGUUaGGaGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 137357 0.67 0.533524
Target:  5'- aGGGGUauccAGCCCuugcgccgCCUCCCCCa- -3'
miRNA:   3'- gCCCCGcc--UCGGGuua-----GGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 143492 0.67 0.552307
Target:  5'- gGGuaGGCGGAGCCuCAGgagggUCCCCUCc -3'
miRNA:   3'- gCC--CCGCCUCGG-GUUagga-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 100347 0.68 0.478706
Target:  5'- gGGGaGCGGAGCCCcgccgcuGUCUUCUaugCCCg- -3'
miRNA:   3'- gCCC-CGCCUCGGGu------UAGGAGG---GGGag -5'
33277 5' -63.8 NC_007605.1 + 21788 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 39810 0.68 0.441174
Target:  5'- gGGGGCGuGguccccuggaccccAGCCCcgccGAUcCCUCCCCCa- -3'
miRNA:   3'- gCCCCGC-C--------------UCGGG----UUA-GGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 144309 0.68 0.449755
Target:  5'- uGGGGCGGcAGCCUcuaacuuuGGcuguggccucuauuUCCUCCCUUUCc -3'
miRNA:   3'- gCCCCGCC-UCGGG--------UU--------------AGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 91748 0.68 0.461047
Target:  5'- gCGGGGCcucGGCCCuggccUCUUCCCgCUCg -3'
miRNA:   3'- -GCCCCGcc-UCGGGuu---AGGAGGGgGAG- -5'
33277 5' -63.8 NC_007605.1 + 82096 0.68 0.487659
Target:  5'- gGGGGCauccgcGGCCC-AUUUUCUCCCUCa -3'
miRNA:   3'- gCCCCGcc----UCGGGuUAGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 30995 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 34064 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 18719 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 12581 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 15650 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 25304 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 34511 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 28373 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.