miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 34064 0.68 0.469834
Target:  5'- uCGGGGCcagcugccggGGGGCCCugccuGUCUcugCCCCC-Cg -3'
miRNA:   3'- -GCCCCG----------CCUCGGGu----UAGGa--GGGGGaG- -5'
33277 5' -63.8 NC_007605.1 + 34511 0.68 0.495784
Target:  5'- -cGGGCGGccccagaGGCCgGuUCCUCgCCCCUUc -3'
miRNA:   3'- gcCCCGCC-------UCGGgUuAGGAG-GGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 35297 0.69 0.418477
Target:  5'- cCGaGGGUGaGGCCCAG-CC-CCCUCUCg -3'
miRNA:   3'- -GC-CCCGCcUCGGGUUaGGaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 39810 0.68 0.441174
Target:  5'- gGGGGCGuGguccccuggaccccAGCCCcgccGAUcCCUCCCCCa- -3'
miRNA:   3'- gCCCCGC-C--------------UCGGG----UUA-GGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 39972 0.72 0.274364
Target:  5'- gGGGGCuGGGGuCCCGGgacgCCCCCUCc -3'
miRNA:   3'- gCCCCG-CCUC-GGGUUaggaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 40011 0.72 0.274364
Target:  5'- gCGGGGCuGGGGUCCAGgggaCCacgCCCCCa- -3'
miRNA:   3'- -GCCCCG-CCUCGGGUUa---GGa--GGGGGag -5'
33277 5' -63.8 NC_007605.1 + 40382 0.68 0.469834
Target:  5'- uCGGcGCGGGGuCCCAGgaccacgCCcCUCCCUCa -3'
miRNA:   3'- -GCCcCGCCUC-GGGUUa------GGaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 40449 0.67 0.552307
Target:  5'- aCGGGGCGcgcuGGGCCgCGG-CUgCCCCCUg -3'
miRNA:   3'- -GCCCCGC----CUCGG-GUUaGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 40479 0.72 0.274364
Target:  5'- uGGuGGCucGGCCgCGGUCCUCCCCCg- -3'
miRNA:   3'- gCC-CCGccUCGG-GUUAGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 40676 0.67 0.552307
Target:  5'- gGGuaGGCGGAGCCuCAGgagggUCCCCUCc -3'
miRNA:   3'- gCC--CCGCCUCGG-GUUagga-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 40919 1.07 0.000873
Target:  5'- uCGGGGCGGAGCCCAAUCCUCCCCCUCc -3'
miRNA:   3'- -GCCCCGCCUCGGGUUAGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 40996 0.72 0.262365
Target:  5'- aGGGGCGGAGCUUAGgauaCCUCCaggauaauggaaCCCUa -3'
miRNA:   3'- gCCCCGCCUCGGGUUa---GGAGG------------GGGAg -5'
33277 5' -63.8 NC_007605.1 + 49528 0.7 0.355599
Target:  5'- --cGGCcGuAGCCCAGUCCgcgaCCCCCUCu -3'
miRNA:   3'- gccCCGcC-UCGGGUUAGGa---GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 49847 0.67 0.524218
Target:  5'- uGGGGCGGuGUCguggGGUUgUCCCCCg- -3'
miRNA:   3'- gCCCCGCCuCGGg---UUAGgAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 51098 0.7 0.348221
Target:  5'- aGGGuuGGugccuucacagaAGCCCAGUUaUCCCCCUCa -3'
miRNA:   3'- gCCCcgCC------------UCGGGUUAGgAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 52414 0.65 0.618331
Target:  5'- gCGGuGGCGGgugaggcGGCgCGcGUCUUCCCCgUCg -3'
miRNA:   3'- -GCC-CCGCC-------UCGgGU-UAGGAGGGGgAG- -5'
33277 5' -63.8 NC_007605.1 + 58862 0.66 0.609651
Target:  5'- aCGGGGU--GGCCCAGUUCaUCCUCUa- -3'
miRNA:   3'- -GCCCCGccUCGGGUUAGG-AGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 59190 0.69 0.410253
Target:  5'- uGGGGCGGGgaggacGCCUuGUCgC-CCCCCUUc -3'
miRNA:   3'- gCCCCGCCU------CGGGuUAG-GaGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 63019 0.67 0.542889
Target:  5'- aGGGGCaGAcGCCCAG-CCaCCCCUg- -3'
miRNA:   3'- gCCCCGcCU-CGGGUUaGGaGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 71618 0.7 0.370681
Target:  5'- gCGuGGGcCGGAGUUgGAucuucaUCCUCCUCCUCu -3'
miRNA:   3'- -GC-CCC-GCCUCGGgUU------AGGAGGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.