Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33277 | 5' | -63.8 | NC_007605.1 | + | 40919 | 1.07 | 0.000873 |
Target: 5'- uCGGGGCGGAGCCCAAUCCUCCCCCUCc -3' miRNA: 3'- -GCCCCGCCUCGGGUUAGGAGGGGGAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 143735 | 1.07 | 0.000945 |
Target: 5'- uCGGGGCGGAGCCCGAUCCUCCCCCUCc -3' miRNA: 3'- -GCCCCGCCUCGGGUUAGGAGGGGGAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 116749 | 0.76 | 0.14963 |
Target: 5'- gGGGGCacggauGAGCCCAAUCCUCgCCaCCUg -3' miRNA: 3'- gCCCCGc-----CUCGGGUUAGGAG-GG-GGAg -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 159685 | 0.74 | 0.203871 |
Target: 5'- uGGGGCacgaGAGCCCGgcccGUCCggcgCCCUCUCg -3' miRNA: 3'- gCCCCGc---CUCGGGU----UAGGa---GGGGGAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 142675 | 0.73 | 0.250229 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcUCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGG--AGGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141859 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141961 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 142267 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 142369 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 142471 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141757 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141656 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141554 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141452 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141350 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141146 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 141044 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 140942 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 140738 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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33277 | 5' | -63.8 | NC_007605.1 | + | 142573 | 0.73 | 0.255949 |
Target: 5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3' miRNA: 3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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