miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 171577 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 171308 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 171039 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 170771 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 170517 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 170248 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 169979 0.69 0.426801
Target:  5'- gGGGGCGcGAccGCCUcucuGUCCccgCCCCCUg -3'
miRNA:   3'- gCCCCGC-CU--CGGGu---UAGGa--GGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 169711 0.7 0.378385
Target:  5'- gGGGGCuggGGGGCCgCGGgggaaggCCacgCCCCCUCc -3'
miRNA:   3'- gCCCCG---CCUCGG-GUUa------GGa--GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 169000 0.69 0.410253
Target:  5'- aGGGGCccaccGGGCCCGcgaCggCCCCCUCg -3'
miRNA:   3'- gCCCCGc----CUCGGGUuagGa-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 168801 0.66 0.609651
Target:  5'- gGGGGCcgucgcGGGCCCGGUgggCCCCuCUCa -3'
miRNA:   3'- gCCCCGc-----CUCGGGUUAggaGGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 166483 0.69 0.426801
Target:  5'- uCGGGGCGGAcGCC---UCCUCCCa--- -3'
miRNA:   3'- -GCCCCGCCU-CGGguuAGGAGGGggag -5'
33277 5' -63.8 NC_007605.1 + 166403 0.68 0.496691
Target:  5'- gGGGGagGGAGCCCG-UCaUUCCCgUCg -3'
miRNA:   3'- gCCCCg-CCUCGGGUuAGgAGGGGgAG- -5'
33277 5' -63.8 NC_007605.1 + 163007 0.66 0.571284
Target:  5'- uCGGcGGCaGGGGuCCCAgGUCC-CCUCCUg -3'
miRNA:   3'- -GCC-CCG-CCUC-GGGU-UAGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 159685 0.74 0.203871
Target:  5'- uGGGGCacgaGAGCCCGgcccGUCCggcgCCCUCUCg -3'
miRNA:   3'- gCCCCGc---CUCGGGU----UAGGa---GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 159520 0.69 0.40213
Target:  5'- cCGGGGCaccuccGGGcucuCCCGGgacgCCUCCUCCUCg -3'
miRNA:   3'- -GCCCCG------CCUc---GGGUUa---GGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 159113 0.67 0.542889
Target:  5'- gGGGGaaaGAGCCCGcucUCCUCCgCCa- -3'
miRNA:   3'- gCCCCgc-CUCGGGUu--AGGAGGgGGag -5'
33277 5' -63.8 NC_007605.1 + 156187 0.67 0.542889
Target:  5'- aGGGGUgguggaugugcgGGGGCCuCAG-CC-CCCCCUg -3'
miRNA:   3'- gCCCCG------------CCUCGG-GUUaGGaGGGGGAg -5'
33277 5' -63.8 NC_007605.1 + 155215 0.69 0.418477
Target:  5'- uGGGGa--AGCCC--UCCUCCCCCa- -3'
miRNA:   3'- gCCCCgccUCGGGuuAGGAGGGGGag -5'
33277 5' -63.8 NC_007605.1 + 153946 0.66 0.590414
Target:  5'- aGGuuGGCGGGGCUCAGggCCUCCacgaaggCCUUg -3'
miRNA:   3'- gCC--CCGCCUCGGGUUa-GGAGGg------GGAG- -5'
33277 5' -63.8 NC_007605.1 + 153749 0.66 0.609651
Target:  5'- aGGaGGCGGccAGCC---UCCUCUCCCa- -3'
miRNA:   3'- gCC-CCGCC--UCGGguuAGGAGGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.