Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33278 | 5' | -47.5 | NC_007605.1 | + | 5315 | 0.72 | 0.934869 |
Target: 5'- -cCUCCGGGGCUGcguccugccuuGUUGGGUg- -3' miRNA: 3'- uuGAGGCCCCGAC-----------UAGUCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 19402 | 0.68 | 0.993445 |
Target: 5'- uGCUCUGGGuGCUGGgaaaaaugauUCAGGa-- -3' miRNA: 3'- uUGAGGCCC-CGACU----------AGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 49225 | 0.68 | 0.995222 |
Target: 5'- ---aCCGuGGGCaUGAUCAGGg-- -3' miRNA: 3'- uugaGGC-CCCG-ACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 51288 | 0.66 | 0.999117 |
Target: 5'- gGGCUCUGuGGGCUGGg-AGGg-- -3' miRNA: 3'- -UUGAGGC-CCCGACUagUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 52961 | 0.68 | 0.99439 |
Target: 5'- uAGCUUgGGGGCguccggcuggGGUCAGGg-- -3' miRNA: 3'- -UUGAGgCCCCGa---------CUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 54376 | 0.67 | 0.997612 |
Target: 5'- uACUCgGGGGUUGA--GGGUg- -3' miRNA: 3'- uUGAGgCCCCGACUagUCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 55424 | 0.73 | 0.906868 |
Target: 5'- -uCUCCGGGGUcagcgaggcccucuuUGAUCAGGa-- -3' miRNA: 3'- uuGAGGCCCCG---------------ACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 55698 | 0.72 | 0.949869 |
Target: 5'- uGGCUUCGGGGUUG-UCGuGGUUGg -3' miRNA: 3'- -UUGAGGCCCCGACuAGU-CCAAU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 56518 | 0.67 | 0.997612 |
Target: 5'- uGAgUCCaGGGCccUGGUCAGGggAa -3' miRNA: 3'- -UUgAGGcCCCG--ACUAGUCCaaU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 56994 | 0.66 | 0.999117 |
Target: 5'- cGACUCCaggcccccggGuGGGCUGGUUGGGg-- -3' miRNA: 3'- -UUGAGG----------C-CCCGACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 69674 | 0.77 | 0.762907 |
Target: 5'- aGACUCCGGGGUUGcggAGGUUGg -3' miRNA: 3'- -UUGAGGCCCCGACuagUCCAAU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 72496 | 0.66 | 0.998909 |
Target: 5'- uGC-CCGGGuGCgUGGUCGGGa-- -3' miRNA: 3'- uUGaGGCCC-CG-ACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 86992 | 0.7 | 0.972521 |
Target: 5'- cAGC-CCGGGGCUGuUguGGUa- -3' miRNA: 3'- -UUGaGGCCCCGACuAguCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 89075 | 0.7 | 0.980528 |
Target: 5'- cACUCgGGGGCcUGAgggCAGGg-- -3' miRNA: 3'- uUGAGgCCCCG-ACUa--GUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 91341 | 0.7 | 0.972521 |
Target: 5'- gGGCaCCGGGGCUGGcgUUAGGg-- -3' miRNA: 3'- -UUGaGGCCCCGACU--AGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 91853 | 0.7 | 0.975416 |
Target: 5'- gGGCUUCaGGGGCaUGGUCGGGc-- -3' miRNA: 3'- -UUGAGG-CCCCG-ACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 93158 | 0.69 | 0.989825 |
Target: 5'- aGACUCUGGGccCUGAUUAGGa-- -3' miRNA: 3'- -UUGAGGCCCc-GACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 108276 | 0.67 | 0.996587 |
Target: 5'- -gUUgCGGGGCUGucguacagCAGGUUGg -3' miRNA: 3'- uuGAgGCCCCGACua------GUCCAAU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 115171 | 0.69 | 0.989825 |
Target: 5'- uGCUCuCGGGcGgaGAUCAGGa-- -3' miRNA: 3'- uUGAG-GCCC-CgaCUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 117598 | 0.67 | 0.997612 |
Target: 5'- gAGgUCCGGGcGCUGGaagagCAGGUc- -3' miRNA: 3'- -UUgAGGCCC-CGACUa----GUCCAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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