miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33278 5' -47.5 NC_007605.1 + 170651 0.75 0.83169
Target:  5'- gGGCUCCGGGGCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCCGACuaGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 51288 0.66 0.999117
Target:  5'- gGGCUCUGuGGGCUGGg-AGGg-- -3'
miRNA:   3'- -UUGAGGC-CCCGACUagUCCaau -5'
33278 5' -47.5 NC_007605.1 + 140631 0.67 0.997612
Target:  5'- gAGCUCgGGGGC-GGcCGGGUg- -3'
miRNA:   3'- -UUGAGgCCCCGaCUaGUCCAau -5'
33278 5' -47.5 NC_007605.1 + 123960 0.67 0.997612
Target:  5'- cAC-CCGGGGCUGAUCc----- -3'
miRNA:   3'- uUGaGGCCCCGACUAGuccaau -5'
33278 5' -47.5 NC_007605.1 + 125704 0.67 0.997137
Target:  5'- cACUCCGGGa--GAUCAGGa-- -3'
miRNA:   3'- uUGAGGCCCcgaCUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 171188 0.67 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 170128 0.67 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 169591 0.67 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 52961 0.68 0.99439
Target:  5'- uAGCUUgGGGGCguccggcuggGGUCAGGg-- -3'
miRNA:   3'- -UUGAGgCCCCGa---------CUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 5315 0.72 0.934869
Target:  5'- -cCUCCGGGGCUGcguccugccuuGUUGGGUg- -3'
miRNA:   3'- uuGAGGCCCCGAC-----------UAGUCCAau -5'
33278 5' -47.5 NC_007605.1 + 133999 0.72 0.940153
Target:  5'- uGC-CCGGGGCggcgGGUCGGGa-- -3'
miRNA:   3'- uUGaGGCCCCGa---CUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 55698 0.72 0.949869
Target:  5'- uGGCUUCGGGGUUG-UCGuGGUUGg -3'
miRNA:   3'- -UUGAGGCCCCGACuAGU-CCAAU- -5'
33278 5' -47.5 NC_007605.1 + 91341 0.7 0.972521
Target:  5'- gGGCaCCGGGGCUGGcgUUAGGg-- -3'
miRNA:   3'- -UUGaGGCCCCGACU--AGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 91853 0.7 0.975416
Target:  5'- gGGCUUCaGGGGCaUGGUCGGGc-- -3'
miRNA:   3'- -UUGAGG-CCCCG-ACUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 93158 0.69 0.989825
Target:  5'- aGACUCUGGGccCUGAUUAGGa-- -3'
miRNA:   3'- -UUGAGGCCCc-GACUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 56994 0.66 0.999117
Target:  5'- cGACUCCaggcccccggGuGGGCUGGUUGGGg-- -3'
miRNA:   3'- -UUGAGG----------C-CCCGACUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 69674 0.77 0.762907
Target:  5'- aGACUCCGGGGUUGcggAGGUUGg -3'
miRNA:   3'- -UUGAGGCCCCGACuagUCCAAU- -5'
33278 5' -47.5 NC_007605.1 + 55424 0.73 0.906868
Target:  5'- -uCUCCGGGGUcagcgaggcccucuuUGAUCAGGa-- -3'
miRNA:   3'- uuGAGGCCCCG---------------ACUAGUCCaau -5'
33278 5' -47.5 NC_007605.1 + 168960 0.72 0.949869
Target:  5'- uGCUCCGGGGCcgguggcGGUCuGGUa- -3'
miRNA:   3'- uUGAGGCCCCGa------CUAGuCCAau -5'
33278 5' -47.5 NC_007605.1 + 86992 0.7 0.972521
Target:  5'- cAGC-CCGGGGCUGuUguGGUa- -3'
miRNA:   3'- -UUGaGGCCCCGACuAguCCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.