Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33278 | 5' | -47.5 | NC_007605.1 | + | 115171 | 0.69 | 0.989825 |
Target: 5'- uGCUCuCGGGcGgaGAUCAGGa-- -3' miRNA: 3'- uUGAG-GCCC-CgaCUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 108276 | 0.67 | 0.996587 |
Target: 5'- -gUUgCGGGGCUGucguacagCAGGUUGg -3' miRNA: 3'- uuGAgGCCCCGACua------GUCCAAU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 56518 | 0.67 | 0.997612 |
Target: 5'- uGAgUCCaGGGCccUGGUCAGGggAa -3' miRNA: 3'- -UUgAGGcCCCG--ACUAGUCCaaU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 56994 | 0.66 | 0.999117 |
Target: 5'- cGACUCCaggcccccggGuGGGCUGGUUGGGg-- -3' miRNA: 3'- -UUGAGG----------C-CCCGACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 130198 | 1.04 | 0.026909 |
Target: 5'- cAACUCCGGGGCUGAUCAGGUUAa -3' miRNA: 3'- -UUGAGGCCCCGACUAGUCCAAU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 69674 | 0.77 | 0.762907 |
Target: 5'- aGACUCCGGGGUUGcggAGGUUGg -3' miRNA: 3'- -UUGAGGCCCCGACuagUCCAAU- -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 55424 | 0.73 | 0.906868 |
Target: 5'- -uCUCCGGGGUcagcgaggcccucuuUGAUCAGGa-- -3' miRNA: 3'- uuGAGGCCCCG---------------ACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 168960 | 0.72 | 0.949869 |
Target: 5'- uGCUCCGGGGCcgguggcGGUCuGGUa- -3' miRNA: 3'- uUGAGGCCCCGa------CUAGuCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 86992 | 0.7 | 0.972521 |
Target: 5'- cAGC-CCGGGGCUGuUguGGUa- -3' miRNA: 3'- -UUGaGGCCCCGACuAguCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 49225 | 0.68 | 0.995222 |
Target: 5'- ---aCCGuGGGCaUGAUCAGGg-- -3' miRNA: 3'- uugaGGC-CCCG-ACUAGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 152553 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 149484 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 19402 | 0.68 | 0.993445 |
Target: 5'- uGCUCUGGGuGCUGGgaaaaaugauUCAGGa-- -3' miRNA: 3'- uUGAGGCCC-CGACU----------AGUCCaau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 155622 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 137208 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 146415 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 158690 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 54376 | 0.67 | 0.997612 |
Target: 5'- uACUCgGGGGUUGA--GGGUg- -3' miRNA: 3'- uUGAGgCCCCGACUagUCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 140277 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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33278 | 5' | -47.5 | NC_007605.1 | + | 143346 | 0.68 | 0.993445 |
Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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