miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 13304 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 31718 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 28649 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 150918 0.69 0.867831
Target:  5'- --uGGGGUGGGAcGGGGcAGGCGugauccuggGCGCAa -3'
miRNA:   3'- uguCCCCACCCU-CCUU-UCUGU---------UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 51224 0.7 0.852304
Target:  5'- cCGGGGG-GaGGAGGuagGAGACAGC-CAg -3'
miRNA:   3'- uGUCCCCaC-CCUCCu--UUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 91391 0.7 0.852304
Target:  5'- -uGGGGGUGGGAGccaaAGAGGCAG-GCAg -3'
miRNA:   3'- ugUCCCCACCCUCc---UUUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 96375 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96093 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96012 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 171608 0.7 0.818845
Target:  5'- gGCGGGGGcaUGGGGGGGucGGAUuuCGCc -3'
miRNA:   3'- -UGUCCCC--ACCCUCCUu-UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 169716 0.7 0.81797
Target:  5'- uGCGGGGGggcugGGGggccgcgGGGGAAGGCcACGCc -3'
miRNA:   3'- -UGUCCCCa----CCC-------UCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 170253 0.7 0.81797
Target:  5'- uGCGGGGGggcugGGGggccgcgGGGGAAGGCcACGCc -3'
miRNA:   3'- -UGUCCCCa----CCC-------UCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 170776 0.7 0.81797
Target:  5'- uGCGGGGGggcugGGGggccgcgGGGGAAGGCcACGCc -3'
miRNA:   3'- -UGUCCCCa----CCC-------UCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 171313 0.7 0.81797
Target:  5'- uGCGGGGGggcugGGGggccgcgGGGGAAGGCcACGCc -3'
miRNA:   3'- -UGUCCCCa----CCC-------UCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 40316 0.71 0.801035
Target:  5'- gGCGGGGGUGGGGGGu------GCGCu -3'
miRNA:   3'- -UGUCCCCACCCUCCuuucuguUGUGu -5'
33279 3' -53.7 NC_007605.1 + 126414 0.71 0.791891
Target:  5'- aGCGGGGGUGGaGGGGcgucuCGACGCu -3'
miRNA:   3'- -UGUCCCCACC-CUCCuuucuGUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 40160 0.71 0.791891
Target:  5'- gGCAGGGGgggGGGcagugaGGGAGGGGCGugGu- -3'
miRNA:   3'- -UGUCCCCa--CCC------UCCUUUCUGUugUgu -5'
33279 3' -53.7 NC_007605.1 + 133530 0.71 0.782597
Target:  5'- gGCuGGGGaugGGGAGGGcGGGGCuGGCGCAg -3'
miRNA:   3'- -UGuCCCCa--CCCUCCU-UUCUG-UUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 63098 0.71 0.773165
Target:  5'- cCGGGGGUGgcaguGGAGGggGGAgcuuCAGCugGu -3'
miRNA:   3'- uGUCCCCAC-----CCUCCuuUCU----GUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 137576 0.72 0.763603
Target:  5'- --uGGGGUGGcuggcgggcuGGGGGAGGCGGCGCAa -3'
miRNA:   3'- uguCCCCACCc---------UCCUUUCUGUUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.