miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 133595 0.67 0.941545
Target:  5'- -gGGGGGUccguGGGAGaGAuuGAGACuGCAUAc -3'
miRNA:   3'- ugUCCCCA----CCCUC-CU--UUCUGuUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 155333 0.67 0.946109
Target:  5'- gACAGGGGa-GGAGGccGGGCGcuauagGCGCAu -3'
miRNA:   3'- -UGUCCCCacCCUCCuuUCUGU------UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 132461 0.67 0.946109
Target:  5'- uCAGGGGcaGGuGAGGAAGauGACGACGg- -3'
miRNA:   3'- uGUCCCCa-CC-CUCCUUU--CUGUUGUgu -5'
33279 3' -53.7 NC_007605.1 + 32227 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 28865 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 35003 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 25796 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 29158 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 69005 0.68 0.920277
Target:  5'- -aGGGGGUGcuggccaGGAGGccGAGACAgaagACACAg -3'
miRNA:   3'- ugUCCCCAC-------CCUCCu-UUCUGU----UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 16589 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 13814 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 95907 0.68 0.909021
Target:  5'- gGCAGGaGGggcaggagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-------CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 31934 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 36631 0.68 0.902745
Target:  5'- gGCGGGGGUGGuGGuGAAGGugGugGa- -3'
miRNA:   3'- -UGUCCCCACCcUC-CUUUCugUugUgu -5'
33279 3' -53.7 NC_007605.1 + 19658 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 16883 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 13520 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 22727 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 167261 0.68 0.902745
Target:  5'- cGCAGGGGcguUGGuGGcGGAGucuGGCAACGCc -3'
miRNA:   3'- -UGUCCCC---ACC-CU-CCUUu--CUGUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 57732 0.68 0.909021
Target:  5'- gGCGcGGGGUGGGGugucGGGGAGGCGGg--- -3'
miRNA:   3'- -UGU-CCCCACCCU----CCUUUCUGUUgugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.