miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 64803 0.73 0.662963
Target:  5'- uCGGGGGUGGuGAGGAu--GCAGCugGc -3'
miRNA:   3'- uGUCCCCACC-CUCCUuucUGUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 73279 0.73 0.683593
Target:  5'- gACGGuGGGUGGGAGGAAuuguuccuugGGAUucCACu -3'
miRNA:   3'- -UGUC-CCCACCCUCCUU----------UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 13730 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 170311 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 170833 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 171371 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 169773 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 29075 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 35212 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 32143 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 26006 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 22937 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 19868 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 16799 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 30693 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 33762 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 24555 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 18417 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 27624 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 21486 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.