miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 41879 1.09 0.005084
Target:  5'- gACAGGGGUGGGAGGAAAGACAACACAa -3'
miRNA:   3'- -UGUCCCCACCCUCCUUUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 169718 0.79 0.36451
Target:  5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3'
miRNA:   3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 171316 0.79 0.36451
Target:  5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3'
miRNA:   3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 170778 0.79 0.36451
Target:  5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3'
miRNA:   3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 170256 0.79 0.36451
Target:  5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3'
miRNA:   3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 105651 0.77 0.480214
Target:  5'- -gAGGGG-GGGAGGAcGAGACGACGg- -3'
miRNA:   3'- ugUCCCCaCCCUCCU-UUCUGUUGUgu -5'
33279 3' -53.7 NC_007605.1 + 138409 0.76 0.519317
Target:  5'- cACGGcGGGUGGG-GGAAGGAgcUGACACGa -3'
miRNA:   3'- -UGUC-CCCACCCuCCUUUCU--GUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 144043 0.76 0.529293
Target:  5'- -gGGGGGguaggGGGGGGAGGGAUuACACu -3'
miRNA:   3'- ugUCCCCa----CCCUCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 41227 0.76 0.529293
Target:  5'- -gGGGGGguaggGGGGGGAGGGAUuACACu -3'
miRNA:   3'- ugUCCCCa----CCCUCCUUUCUGuUGUGu -5'
33279 3' -53.7 NC_007605.1 + 32433 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 29364 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 26295 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 23226 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 17089 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 14020 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 20157 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 165712 0.74 0.651569
Target:  5'- aACGGGGGUGGGcggugaucaGGGAGaacaauuccccggGGACAccuGCACGa -3'
miRNA:   3'- -UGUCCCCACCC---------UCCUU-------------UCUGU---UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 139492 0.73 0.661928
Target:  5'- cGguGGGGUcgugacuauauagGGGAGGuAAGGCGACAUAu -3'
miRNA:   3'- -UguCCCCA-------------CCCUCCuUUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 171058 0.73 0.662963
Target:  5'- -gGGGGGUGGGGcauGggGGGCcGCGCAu -3'
miRNA:   3'- ugUCCCCACCCUc--CuuUCUGuUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 169998 0.73 0.662963
Target:  5'- -gGGGGGUGGGGcauGggGGGCcGCGCAu -3'
miRNA:   3'- ugUCCCCACCCUc--CuuUCUGuUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.