miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 12279 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 13304 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 13520 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 13730 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 13814 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 14020 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 15348 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 16373 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 16589 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 16799 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 16883 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 17089 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 18417 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 19442 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5'
33279 3' -53.7 NC_007605.1 + 19658 0.68 0.920845
Target:  5'- cCAGGGGa--GAGGGAAGGCGACuCGc -3'
miRNA:   3'- uGUCCCCaccCUCCUUUCUGUUGuGU- -5'
33279 3' -53.7 NC_007605.1 + 19868 0.73 0.693846
Target:  5'- gACGGGcGUGGGAGGcuGGACuuUACAg -3'
miRNA:   3'- -UGUCCcCACCCUCCuuUCUGuuGUGU- -5'
33279 3' -53.7 NC_007605.1 + 19952 0.68 0.920845
Target:  5'- cACAGGGG-GGcGGGGAuggcccGGGugGACAgAg -3'
miRNA:   3'- -UGUCCCCaCC-CUCCU------UUCugUUGUgU- -5'
33279 3' -53.7 NC_007605.1 + 20157 0.74 0.611092
Target:  5'- gACAGGGGcGGGAGGGGgcuGGGCcuCACc -3'
miRNA:   3'- -UGUCCCCaCCCUCCUU---UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 21486 0.72 0.753922
Target:  5'- -aAGGGGgacgGGGAGGggGGGaGGCugGg -3'
miRNA:   3'- ugUCCCCa---CCCUCCuuUCUgUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 22511 0.69 0.867831
Target:  5'- uCGGGccuGGagGGGAGGAGAGGgGACGCc -3'
miRNA:   3'- uGUCC---CCa-CCCUCCUUUCUgUUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.