miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33279 3' -53.7 NC_007605.1 + 91391 0.7 0.852304
Target:  5'- -uGGGGGUGGGAGccaaAGAGGCAG-GCAg -3'
miRNA:   3'- ugUCCCCACCCUCc---UUUCUGUUgUGU- -5'
33279 3' -53.7 NC_007605.1 + 171371 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 63098 0.71 0.773165
Target:  5'- cCGGGGGUGgcaguGGAGGggGGAgcuuCAGCugGu -3'
miRNA:   3'- uGUCCCCAC-----CCUCCuuUCU----GUUGugU- -5'
33279 3' -53.7 NC_007605.1 + 40160 0.71 0.791891
Target:  5'- gGCAGGGGgggGGGcagugaGGGAGGGGCGugGu- -3'
miRNA:   3'- -UGUCCCCa--CCC------UCCUUUCUGUugUgu -5'
33279 3' -53.7 NC_007605.1 + 40316 0.71 0.801035
Target:  5'- gGCGGGGGUGGGGGGu------GCGCu -3'
miRNA:   3'- -UGUCCCCACCCUCCuuucuguUGUGu -5'
33279 3' -53.7 NC_007605.1 + 96012 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96093 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 96375 0.7 0.818845
Target:  5'- aGCAGGaGGagGGGcAGGAGGGGCAGgaGCAg -3'
miRNA:   3'- -UGUCC-CCa-CCC-UCCUUUCUGUUg-UGU- -5'
33279 3' -53.7 NC_007605.1 + 171608 0.7 0.818845
Target:  5'- gGCGGGGGcaUGGGGGGGucGGAUuuCGCc -3'
miRNA:   3'- -UGUCCCC--ACCCUCCUu-UCUGuuGUGu -5'
33279 3' -53.7 NC_007605.1 + 170833 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 170311 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 169773 0.73 0.693846
Target:  5'- gACAGGGGgcgGGGAcaGAGAGGCGGuCGCGc -3'
miRNA:   3'- -UGUCCCCa--CCCUc-CUUUCUGUU-GUGU- -5'
33279 3' -53.7 NC_007605.1 + 170256 0.79 0.36451
Target:  5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3'
miRNA:   3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 170778 0.79 0.36451
Target:  5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3'
miRNA:   3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 171316 0.79 0.36451
Target:  5'- -uGGGGGcGGGAGcGggGGGCGGCGCGg -3'
miRNA:   3'- ugUCCCCaCCCUC-CuuUCUGUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 138409 0.76 0.519317
Target:  5'- cACGGcGGGUGGG-GGAAGGAgcUGACACGa -3'
miRNA:   3'- -UGUC-CCCACCCuCCUUUCU--GUUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 165712 0.74 0.651569
Target:  5'- aACGGGGGUGGGcggugaucaGGGAGaacaauuccccggGGACAccuGCACGa -3'
miRNA:   3'- -UGUCCCCACCC---------UCCUU-------------UCUGU---UGUGU- -5'
33279 3' -53.7 NC_007605.1 + 169998 0.73 0.662963
Target:  5'- -gGGGGGUGGGGcauGggGGGCcGCGCAu -3'
miRNA:   3'- ugUCCCCACCCUc--CuuUCUGuUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 171058 0.73 0.662963
Target:  5'- -gGGGGGUGGGGcauGggGGGCcGCGCAu -3'
miRNA:   3'- ugUCCCCACCCUc--CuuUCUGuUGUGU- -5'
33279 3' -53.7 NC_007605.1 + 73279 0.73 0.683593
Target:  5'- gACGGuGGGUGGGAGGAAuuguuccuugGGAUucCACu -3'
miRNA:   3'- -UGUC-CCCACCCUCCUU----------UCUGuuGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.