miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 3' -57.5 NC_007605.1 + 138697 0.7 0.645274
Target:  5'- cCCUCcgcGGUGUCCGguGGUCCuCAacGUGCc -3'
miRNA:   3'- -GGAGu--CCACAGGUguCCGGG-GU--CAUG- -5'
33280 3' -57.5 NC_007605.1 + 126350 0.7 0.635214
Target:  5'- cCCggGGGUGUCCAaacGGUCCCAGa-- -3'
miRNA:   3'- -GGagUCCACAGGUgu-CCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 113797 0.71 0.625152
Target:  5'- gCCacgCAGGaUGUUCACguGGGCCCCGGcACc -3'
miRNA:   3'- -GGa--GUCC-ACAGGUG--UCCGGGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 88529 0.71 0.625152
Target:  5'- aCC-CAGG-GUCCAUGGGaUCCCAGgGCa -3'
miRNA:   3'- -GGaGUCCaCAGGUGUCC-GGGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 73301 0.71 0.595025
Target:  5'- uCCUUGGGauUCCACuGGCCCCGGc-- -3'
miRNA:   3'- -GGAGUCCacAGGUGuCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 81387 0.71 0.584028
Target:  5'- gCCU-AGGUGUgccauaagugcucCCACGGGCCuuuuCCAGUACc -3'
miRNA:   3'- -GGAgUCCACA-------------GGUGUCCGG----GGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 105074 0.72 0.525936
Target:  5'- aUUCGGGUGaaggcucgaCGCGGGCCCgGGUGCc -3'
miRNA:   3'- gGAGUCCACag-------GUGUCCGGGgUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 3047 0.72 0.52207
Target:  5'- aUCUCGGGcuacgcgcgccCCcCGGGCCCCAGUGCu -3'
miRNA:   3'- -GGAGUCCaca--------GGuGUCCGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 12976 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 31390 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 19114 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 22183 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 25252 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 28321 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 34459 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 16045 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 85235 0.76 0.356129
Target:  5'- uCCUCAGGUG-CCGCccguuccccggcagAGGCCUCGGgggGCg -3'
miRNA:   3'- -GGAGUCCACaGGUG--------------UCCGGGGUCa--UG- -5'
33280 3' -57.5 NC_007605.1 + 15589 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 21727 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 34003 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.