miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 3' -57.5 NC_007605.1 + 30934 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 31351 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 31390 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 34003 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 34420 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 34459 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 40087 0.66 0.871729
Target:  5'- aCCUgggUGGGUgcgGUCCGCuGGCCCCAc--- -3'
miRNA:   3'- -GGA---GUCCA---CAGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 42017 1.12 0.001541
Target:  5'- cCCUCAGGUGUCCACAGGCCCCAGUACg -3'
miRNA:   3'- -GGAGUCCACAGGUGUCCGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 56389 0.68 0.799205
Target:  5'- aCCaaGGGgacGUCCACgugcGGGCCCCuGUAg -3'
miRNA:   3'- -GGagUCCa--CAGGUG----UCCGGGGuCAUg -5'
33280 3' -57.5 NC_007605.1 + 56488 0.67 0.841305
Target:  5'- -gUCAGGcGUCUGCGGGCCgccuCCAGg-- -3'
miRNA:   3'- ggAGUCCaCAGGUGUCCGG----GGUCaug -5'
33280 3' -57.5 NC_007605.1 + 61491 0.68 0.80272
Target:  5'- uCCUCAGGUcucugcuauggGUCCgcuacagccgccuguGgCAGGCCCCGGccccgGCu -3'
miRNA:   3'- -GGAGUCCA-----------CAGG---------------U-GUCCGGGGUCa----UG- -5'
33280 3' -57.5 NC_007605.1 + 73301 0.71 0.595025
Target:  5'- uCCUUGGGauUCCACuGGCCCCGGc-- -3'
miRNA:   3'- -GGAGUCCacAGGUGuCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 81387 0.71 0.584028
Target:  5'- gCCU-AGGUGUgccauaagugcucCCACGGGCCuuuuCCAGUACc -3'
miRNA:   3'- -GGAgUCCACA-------------GGUGUCCGG----GGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 85175 0.7 0.662349
Target:  5'- aCCUgAGGUG-CCACccguuccccggcagAGGCCUCGGgggGCg -3'
miRNA:   3'- -GGAgUCCACaGGUG--------------UCCGGGGUCa--UG- -5'
33280 3' -57.5 NC_007605.1 + 85235 0.76 0.356129
Target:  5'- uCCUCAGGUG-CCGCccguuccccggcagAGGCCUCGGgggGCg -3'
miRNA:   3'- -GGAGUCCACaGGUG--------------UCCGGGGUCa--UG- -5'
33280 3' -57.5 NC_007605.1 + 88529 0.71 0.625152
Target:  5'- aCC-CAGG-GUCCAUGGGaUCCCAGgGCa -3'
miRNA:   3'- -GGaGUCCaCAGGUGUCC-GGGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 98340 0.67 0.805341
Target:  5'- uCCUCuGGGUagacgguggccugaGUCCGCAGGCgUCGG-ACa -3'
miRNA:   3'- -GGAG-UCCA--------------CAGGUGUCCGgGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 98536 0.7 0.685334
Target:  5'- aUCUgGGGgagaaaacUCCgGCAGGCUCCGGUGCa -3'
miRNA:   3'- -GGAgUCCac------AGG-UGUCCGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 100409 0.69 0.724711
Target:  5'- gCCUCgAGcGUGUCCAUaaaguccccgaAGGUgCCGGUAUa -3'
miRNA:   3'- -GGAG-UC-CACAGGUG-----------UCCGgGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 105074 0.72 0.525936
Target:  5'- aUUCGGGUGaaggcucgaCGCGGGCCCgGGUGCc -3'
miRNA:   3'- gGAGUCCACag-------GUGUCCGGGgUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.