miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 3' -57.5 NC_007605.1 + 3047 0.72 0.52207
Target:  5'- aUCUCGGGcuacgcgcgccCCcCGGGCCCCAGUGCu -3'
miRNA:   3'- -GGAGUCCaca--------GGuGUCCGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 10008 0.67 0.833224
Target:  5'- gCCUgcgCAGGUG-CCACAGGUUCCugccGUGu -3'
miRNA:   3'- -GGA---GUCCACaGGUGUCCGGGGu---CAUg -5'
33280 3' -57.5 NC_007605.1 + 12520 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 12938 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 12976 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 15589 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 16006 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 16045 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 18658 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 19075 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 19114 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 21727 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 22144 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 22183 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 24796 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 25213 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 25252 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5'
33280 3' -57.5 NC_007605.1 + 27865 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 28282 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 28321 0.74 0.451031
Target:  5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3'
miRNA:   3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.