miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 3' -57.5 NC_007605.1 + 42017 1.12 0.001541
Target:  5'- cCCUCAGGUGUCCACAGGCCCCAGUACg -3'
miRNA:   3'- -GGAGUCCACAGGUGUCCGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 112434 0.82 0.152793
Target:  5'- gCUCGGGcgUGUCCugGCAGGCCuCCAGUGCc -3'
miRNA:   3'- gGAGUCC--ACAGG--UGUCCGG-GGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 170639 0.77 0.293209
Target:  5'- -gUCGGG-GUCCGCGGGCUCCGGgGCu -3'
miRNA:   3'- ggAGUCCaCAGGUGUCCGGGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 169579 0.77 0.299978
Target:  5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3'
miRNA:   3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5'
33280 3' -57.5 NC_007605.1 + 170116 0.77 0.299978
Target:  5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3'
miRNA:   3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5'
33280 3' -57.5 NC_007605.1 + 171176 0.77 0.299978
Target:  5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3'
miRNA:   3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5'
33280 3' -57.5 NC_007605.1 + 34420 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 31351 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 28282 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 25213 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 22144 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 19075 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 16006 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 12938 0.76 0.328257
Target:  5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3'
miRNA:   3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5'
33280 3' -57.5 NC_007605.1 + 21727 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 24796 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 27865 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 30934 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 34003 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 18658 0.76 0.35073
Target:  5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3'
miRNA:   3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.